Query= MSMg01no508_p16.b1 MSMg01no508_p16.b1 CHROMAT_FILE:
MSMg01no508_p16.b1 PHD_FILE: MSMg01no508_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:04 2005
(550 letters)
>mm_chr8_109802117_109803066
Length = 950
Score = 982 bits (508), Expect = 0.0
Identities = 535/546 (97%), Gaps = 4/546 (0%)
Strand = Plus / Minus
Query: 5 gaattctacatcttgctctggaggcaaacaagactggtttccaggcagctaggaggaggg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaattctacatcttgttctggaggcaaacaagactggtttccaggcagctaggaggaggg 550
Query: 65 tcccaacaaggccacacctactccaacaaggccacacctcctaatagtgcctctcccagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcccaacaaggccacacctactccaacaaggccacacctcctaatagtgcctctcccagg 490
Query: 125 gccaagcatagtcaaaccaccacagaggccctgtctcaaaaacaaacaatgatgagaaac 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 accaagcatagtcaaaccaccacagaggccctgtctcaaaaacaaacaatgatgagaaac 430
Query: 185 caccctgctctgtaaataccactggaacaaacatctttgcagctaagtctgtatttatgg 244
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 429 caccctgctttgtaaataccactggaacaaacatctttgcagctaagtctgtatttatag 370
Query: 245 tcttttaaaagacacttctttggctgaactgtatgacttcaaggccagcctggtttacat 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcttttaaaagtcacttctttggctgaactgtatgacttcaaggccagcctggtttacat 310
Query: 305 agtgagttccaggacagccagagctatacaatgagaccctatctcaaaacaaacaaacaa 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 309 agtgagttccaggacagccagagctatacaatgaaaccctatctcaaaacaaacaaacaa 250
Query: 365 acaaacaaacaaacacacaaacattactgcctgcaatctacatacactccctttatattc 424
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 249 acaaacaaacaaaca----aacattactgcctgtaatctacatacactccctttatattc 194
Query: 425 attcctcagtaaggtttactttgatgatcagtagagaggtgtgagtttgaggccagcttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 attcctcagtaaggtttactttgatgatcagtagagaggtgtgagtttgaggccagcttg 134
Query: 485 agattcatgagaaacctacatcaaagtaaatgtttattattattttgataataatatcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agattcatgagaaacctacatcaaagtaaatgtttattattattttgataataatatcaa 74
Query: 545 aattat 550
||||||
Sbjct: 73 aattat 68
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_p16.g1 MSMg01no508_p16.g1 CHROMAT_FILE:
MSMg01no508_p16.g1 PHD_FILE: MSMg01no508_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:04 2005
(566 letters)
>mm_chr8_109773369_109774334
Length = 966
Score = 988 bits (511), Expect = 0.0
Identities = 553/567 (97%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 1 tcccctagtattcttttccttctgttaggagggactacttgctcttttcactgtctttgg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 201 tcccctagtattcttttccttctgttaggagggactacttgctctcttcactgcctttgg 260
Query: 61 gtttgaagtcctaagggtgtgagttgagaatgcctttgctcatcccctccacagggaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttgaagtcctaagggtgtgagttgagaatgcctttgctcatcccctccacagggaaag 320
Query: 121 ctgcctgagaggatgatgcagacctacaaacatggcttgcaacttaacgacagaaggcat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ctgcctgagaggatgatgcagacctacaaacatggcttgcaacttaacgacagaagacat 380
Query: 181 taaaattatctttctctccttgaaccttagattctgttacttgcatctagactttatgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaattatctttctctccttgaaccttagattctgttacttgcatctagactttatgtt 440
Query: 241 caagcatcttctcagagggacaacatctgagcttggtttcagtttatattaagttacttc 300
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 caagcatcgactcagagggacaacatctgagcttggtttcggtttatattaagttacttc 500
Query: 301 cagttttatggtagatgaggtcgatgccgttcatactgttttgcttttttttaaaaaaat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 cagttttatggtagatgaggtcgatgccgttcatactgttttgctttttttttttaaaat 560
Query: 361 -attttattttattttattttacgtgtatgggtgttttggcttcatatctgtgtgccaca 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattttattttattttattttacgtgtatgggtgttttggcttcatatctgtgtgccaca 620
Query: 420 tggatgtctggtgccagaggcaggtagaagaaggtgtcggatcaccggagctggagtttt 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 tggatgtctggtgccagaggcaggtagaagaaggtgtcggatcaccagagctggagtttt 680
Query: 480 agacagtgtgagatctcttagccagtggccatctctccaaccccttgctttgtagaagag 539
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 agacagtgtgagatctcttatccagtggccatctctccagccccttgctttgtagaagag 740
Query: 540 aaggaagaggaggaagagagagagctt 566
||||||||||| |||||||||||||||
Sbjct: 741 aaggaagaggaagaagagagagagctt 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
