BAC Information

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BAC

Clone NameMSMg01-509A02
Chromosome8 (Build37)
Map Location 71,970,722 - 71,971,410
singlet/doubletsinglet
Overlap geneLOC670593
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
Downstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509A02.T7 (MSMg01no509_a02.b1)MSMg01-509A02.TJ (MSMg01no509_a02.g1)
ACCAG582784AG582785
length752751
length of high quality
(start - end)		685 (51 - 735)648 (81 - 728)
definitionCHROMAT_FILE: MSMg01no509_a02.b1 PHD_FILE: MSMg01no509_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:06 2005CHROMAT_FILE: MSMg01no509_a02.g1 PHD_FILE: MSMg01no509_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTTTCATGCAATTGACTATGATTGCTGACTGCTCTCCT
CCCACCTTTTCTCAAGAGAAAATATGAGGAATACTTAGCTCTTAATTAAA
ACACAAACAAAGGTGCACGCGCACGCAAACACACACACACACACACACAC
ACACACTAAAAAGAATTAAAGACAAGATCGGGCATGCTCAGGGTGGTTTG
GCTGTAGACACTTATGGAAGTCTAAAAGGAAGGATTCCAGGCCTGAAGGA
GATAGGAACTCCAGAGAATGACCAACCACCAGAATCAAATAACATGAACC
CTCAGGGCACTCAGAGATGGAACAATGAAACAAAGAACAAACATGGGTTG
GACGGATATCTCCGAGCACCTATGTAGCAGAGGGGCAGCTAGGTCTTCAC
ATGGGTCCCAATCAACTGGAATGGGGGTATCAAAAAAAGCTGTTCATCCT
ACCTCAGTTTTATTCTTCTAGCTGAGCTACTTTTTCTGTCCTCAGAGAGA
GACGAAGTGCCAGGGTTTGGACATACAGGGAGTCCCAAACTGCTCAGAGG
TGAAGTGGAGGAGGGGCAGGGAGAGACTGTGGGACTGGGTGACCAGGAGG
GGGTCACTGAGCTAGATGTAAACATAAGAAAAAAATTAAATTAAATTTTT
ACAGAAATCATTAAAGTTTTGAAATGTATCTTCAATCACAGAAAGAACTG
TN

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAATTTATTATTTTTTTAT
TTGCTTTCTTAACTCTTACCTACTTATATATTAATTCATTTTTCATATTC
TTACTTCAAACAACAGCTTGTAGAGTTATTGTCTATGGTTTCATGGAGAT
CTTTGCTTTTAGTCTTTGGGTAAACTAAGGATAAATGTGGGATTTCATCT
AGACTACTTAAAATAGTAAAAACTCTAGTCTTCTTTCTTTCTCTCAGGGA
ACCAAGGCTAGTGACTAACAGTTGGAACCCATGAAACTAATCAATAAGGA
ACATGATGTCTCATAAGTCCTAGGATGTTGCAAAGAAACACCTTAACACT
GGGCTCAGTGATGCTGCGTAACATAGCCCAGCACTTCTTCCTTGCTCTTT
GTATTTACACTATAAATACTGCTTTATTCACTGAGTGTAAAAGCTACCAT
AAGATCCCTAGAGATGTAAGTAAGCATATTTTTACGAACATCATGTTTAA
ATATACACAGGTCATGAATATTTCAATCCTGAATTTATCCTGTTTTTCAG
TAATTCAGGACGTGTGATTGTCCACTGAATCTTTGCACAAGTTTTGTTCA
TCTTTCTAACTCCTCTGTTCACTCACTCAAAAAATTAATAGTACCTATTT
AATGTGTTCAAAAAAGTTTATGCCTCCTCTGTAAACCTAATATGAGCTGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_a02.b1 MSMg01no509_a02.b1 CHROMAT_FILE:
MSMg01no509_a02.b1 PHD_FILE: MSMg01no509_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:06 2005
         (685 letters)



>mm_chr8_71970518_71971601
          Length = 1084

 Score = 1172 bits (606), Expect = 0.0
 Identities = 664/690 (96%), Gaps = 13/690 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttttcatgcaattgactatgattgctgactgctctcctcccaccttttctca 64
           |||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 205 gaattcacttttca-gcaattgactatgattgctgactgctcagctcccaccttttctca 263

                                                                       
Query: 65  agagaaaatatgaggaatacttagctcttaattaaaacacaaacaaaggtgcacgcgcac 124
           |||| |||||||||||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct: 264 agaggaaatatgaggaatacttagctcttaattaaaacacaaacaaaagtgcacacacac 323

                                                                       
Query: 125 gcaaacacacacacac--------acacacacacacacactaaaaagaattaaagacaag 176
           ||||||||||||||||        ||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcaaacacacacacacaaacacaaacacacacacacacactaaaaagaattaaagacaag 383

                                                                       
Query: 177 atcgggcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atcgggcatgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggatt 443

                                                                       
Query: 237 ccaggcctgaaggagataggaactccagagaatgaccaaccaccagaatcaaataacatg 296
           |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 444 ccaggcctgaaggagataggaactccagaggatgaccaactaccagaatcaaataacatg 503

                                                                       
Query: 297 aaccctcagggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacgga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaccctcagggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacgga 563

                                                                       
Query: 357 tatctccgagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaac 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatctccgagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaac 623

                                                                       
Query: 417 tggaatgggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgag 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaatgggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgag 683

                                                                       
Query: 477 ctactttttctgtcctcagagagagacgaagtgccagggtttggacatacagggagtccc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 684 ctactttttctgtcctcagagagagacgaagtgccagggtttggacatacatggagtccc 743

                                                                       
Query: 537 aaactgctcagaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccag 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aaactgctcagaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccag 803

                                                                       
Query: 597 gagggggtcactgagctagatgtaaacat----aagaaaaaaattaaattaaatttttac 652
           |||||||||||||||||||||||||||||    ||||||||||| ||||||| |||||||
Sbjct: 804 gagggggtcactgagctagatgtaaacatgaacaagaaaaaaataaaattaagtttttac 863

                                         
Query: 653 agaaatcattaaagttttgaaatgtatctt 682
           | | ||||||||||||||||||||||||||
Sbjct: 864 atatatcattaaagttttgaaatgtatctt 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1084
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1074
Effective search space:   724950
Effective search space used:   724950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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