BAC Information

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BAC

Clone NameMSMg01-509H04
Chromosome8 (Build37)
Map Location 4,767,900 - 4,768,510
singlet/doubletsinglet
Overlap geneShcbp1
Upstream geneLOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234
Downstream geneEG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509H04.T7 (MSMg01no509_h04.b1)MSMg01-509H04.TJ (MSMg01no509_h04.g1)
ACCAG583122AG583123
length753760
length of high quality
(start - end)
668 (76 - 743)603 (79 - 681)
definitionCHROMAT_FILE: MSMg01no509_h04.b1 PHD_FILE: MSMg01no509_h04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:41 2005CHROMAT_FILE: MSMg01no509_h04.g1 PHD_FILE: MSMg01no509_h04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCG
CGGAATTCTCAATCTTGCAAAACAAATGGCTGAAAAGCACCTAAAAAAAT
GTTCAACATTCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAGAAACTCAGGTGACAG
CAGATGCTACAAAGGATGTGGAAAAAGAGGAACACTCCTCCATTGCTGGT
GAAATTGCAAGCTGCTACAACCACTCTGGCAGTTCCTCAAACAACCTGAG
AACCCAGCTATACCACTCCTGATTATATACCCAGATGATGCTCCAGCATG
TAATAAGGGCACATGCTCCACTATATTCATAGCAGCCATATTTATAATAG
GCAGAAACTGAGAACAACCCACATATCCCTCAACAAAAGAATGGATACAG
AAAATATGGTATATTTACACAATGGAATACTACTCAGCTATTAAAAACAA
TGACTTCATCAAATTCACAGGCAAATGGATGGAATTTGAAAATATCATCC
TGAGTGAGGTAACTCAGTCACAAAAGAACATGCATGGCATGTAATCATTG
ATAAGTGAATATTCAAAAGCTCAGAATATACAAGATTCAATTCACAGACC
ATATGAAGCTCAAGAAGGAAGACTAAAGTGTGGATACTTCAGTCCTTAGA
AGGGGGAACAAAATACTCACAGGAGGAAATATGGAATCAAAGTGTGGAGC
AGA
CCCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTACCTCAACCAACACCTC
AAACACATTAGTGTGCCAGACTGCCCACCATCCAGATGGTTCAAGGACCT
TTTCCAAGAAGCTGACTGTGAATTCCTTTACCTCAGAGGCCTTACAGTCA
GCTACAAATTAAATAAGAATTGGAAATGTATAGATGAGAAGTTAATAAAT
CCATCTGAGTCCACTTTCTCAGAACTGACAATCTATGGACAAGCTACTTG
CAAAAAAAAAAAAAAAATTACTCATTTATTAATGTAATCTTGATAGGCTC
TGAATCGTTCATAAAACAGAAGTTCATTTGTTTGGATAATTCGTGGAAAA
GGAGTTTTTCCTTCTGGCACCAGAGTTTTTACAGTAGCATCTGGATTAGC
ATGATAGCCTTGATCACTGCATGGATCTGCATCCAGGAATAAACCTAAAG
CAATATAACACAAAGATTCAACTATCTAGTGTAGAGGTAATGGGCTACAC
CACTTTGGCTCCCAGCAGGTTGCACTTATACACCTGCCCAGGAGCTATCT
GGATTCACAAATGGAAGACAAATAGATAGACACACACACACACACACACA
CACACACACACACAAGTTAATTTTAAAATGCCTTGGCTAACTTAAAGGCT
GGTCAGTTCTAATTCTTCCCACAGCTAGCATACATTTCCCTCCTGGAACC
TGGGTTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_h04.g1 MSMg01no509_h04.g1 CHROMAT_FILE:
MSMg01no509_h04.g1 PHD_FILE: MSMg01no509_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:41 2005
         (603 letters)



>mm_chr8_4767700_4768698
          Length = 999

 Score =  984 bits (509), Expect = 0.0
 Identities = 582/615 (94%), Gaps = 16/615 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttacctcaaccaacacctcaaacacattagtgtgccagactgcccaccatccagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttacctcaaccaacacctcaaacacattagtgtgccagactgcccaccatccagatg 260

                                                                       
Query: 61  gttcaaggaccttttccaagaagctgactgtgaattcctttacctcagaggccttacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcaaggaccttttccaagaagctgactgtgaattcctttacctcagaggccttacagt 320

                                                                       
Query: 121 cagctacaaattaaataagaattggaaatgtatagatgagaagttaataaatccatctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctacaaattaaataagaattggaaatgtatagatgagaagttaataaatccatctga 380

                                                                       
Query: 181 gtccactttctcagaactgacaatctatggacaagctacttgcaaaaaaaaaaaaaaaat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 381 gtccactttcttagaactgacaatctatggacaagctacttgcaaaaaaaaaaaaa---t 437

                                                                       
Query: 241 tactcatttattaatgtaatcttgataggctctgaatcgttcataaaacagaagttcatt 300
           ||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tactcacctaa-aatgtaatcttgataggctctgaatcgttcataaaacagaagttcatt 496

                                                                       
Query: 301 tgtttggataattcgtggaaaaggagtttttccttctggcaccagagtttttacagtagc 360
           ||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||
Sbjct: 497 tgtttggataattcgtggaaaaggagtttttccttctggtatgagagtttttacagtagc 556

                                                                       
Query: 361 atctggattagcatgatagccttgatcactgcatggatctgcatccaggaataaacctaa 420
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 557 acctggattagcatgatagccttgatcactgcatggatctgcatccaagaataaacctaa 616

                                                                       
Query: 421 agcaatataacacaaagattcaactatctagtgtagaggtaatgggctacaccactttgg 480
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 617 agcaatataacacaaagactcaaccatctagtgtagaggtaatgggctacaccactttgg 676

                                                                       
Query: 481 ctcccagcaggttgcacttatacacctgcccaggagctatctggattcacaaatggaaga 540
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctcccagcaggtcgcacttacacacctgcccaggagctatctggattcacaaatggaaga 736

                                                                       
Query: 541 caaatagatagacacacacacacacacacacacacacacacacaca------------ag 588
           || ||| | | |||||||||||||||||||||||||||||||||||            ||
Sbjct: 737 cagatacacacacacacacacacacacacacacacacacacacacacacacacacactag 796

                          
Query: 589 ttaattttaaaatgc 603
           |||||||||||||||
Sbjct: 797 ttaattttaaaatgc 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 999
Length adjustment: 10
Effective length of query: 593
Effective length of database: 989
Effective search space:   586477
Effective search space used:   586477
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)