TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGACTCTCCACAGTACATATTTAAACAAACTGAATAATTCAACAAC
AACAAAAAAATTTAAGTTAAGGGTATGAACCAATTCCTAACCTGTTAAAG
GCAGAAGCCTCTTGATGTGTCCTAGGATGGATCTAAGGGTAAAAGATCAG
AAGAGGAATAAACTGAGGAAAGATATTGGGCTAGGGCTTCCTCCTTCAAC
ACCAGTCAGTATGGTGGTGCCGGCAAAGCTCACCAGCTTTCTTGGTTTCT
GTATCACACTGTTATTGCCTCTGGGAACTTAGAAAGAAAGAAAGAAAGCT
CCTAGCATCTATATCCCATCACTACTGAAAAAAATTATTACACTCACTTT
ATTATTTTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTGTGTCTGTGTGT
CTGTGTGTGCTATAGCACATGTATGTAGAGGTCAAAGAACAACTTGCAGG
AGTCAGTTCTCTCCTTCCTCCATATGGATATGAGAGATTGACCTTAAGTT
ATCAGGCTCACCAAAGACTGTCCTACCCACCAAACCATTCGCGGGTCCCC
AGAACATCTCCAGTCTTAAAGATGCTCACAGGACTTGTAGGCTGACTCTA
TGTGAGATCATGTCTTGCCTGCTGTAAAGTTCTATGCTCTTGGTCCTTAA
ACAGCTCTGGAAAGTTG

ATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACACGAGCCGTCCTGANGGNGNNGCCCTGAAGCAAGATCAA
AGNNGNCCCCATAGAGACCCACNAAATCTCCTGAGGGGGTAGGTTATTAT
ATTTATCTGATTGCTTAACTTGACTGCCTGCCTGCCTGCCTGCCTGCCTG
CCTGCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTTTTTT
TTACAGCCAACCAACCAACCTACCGACCCCCCAACCACCCACCCACCCAC
CCCCGGACATTTTCGGTCATTTTACAAACCCACACGCAAACCCGCAGACA
AGCTTTTTTTCCCCCTTCCGCGCAGGCTTGCATTCTATCTTTCTTTCTTT
CTTTCTCCCTCTCCTTTTTTTTTTTTTTCACTCTAACATACTTCCCATCT
GCTAATCAAACTCACGGAACTCTTGTATGCGATTTCAAAACCTTTACCCT
AAATTCCCCTATCCCAACAAGTATTTTTATTACCACAACAACATCAAGAT
CTTTTTTTCTATGTTTTCATACCTCGCCTTATTACATCAGACTTCCCTTG
TGTCTACACCTTTCTCTATCTTCCCCAGCCTTTTGGCGTTTTTTCAATTA
TCACCCACCTCCCTTTATATCTTTTTTTATCTTTTTTTCAATTAAAGACC
CATCAATTTTTTGGCCTCTCTTATCTTTATATTATATATCGTTTCATCTC
TATTTATATTCCTTCCCCCCTTCGTCCGTCTTCGCCCGCTTCCTATATAT
TCCCN

Query= MSMg01no509_h17.b1 MSMg01no509_h17.b1 CHROMAT_FILE:
MSMg01no509_h17.b1 PHD_FILE: MSMg01no509_h17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:43 2005
         (552 letters)



>mm_chr8_44020148_44021099
          Length = 952

 Score = 1025 bits (530), Expect = 0.0
 Identities = 542/548 (98%), Gaps = 4/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagactctccacagtacatatttaaacaaactgaataattcaacaacaacaaaaa 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagactccccaaagtacatatttaaacaaactgaataattcaacaacaacaaaaa 264

                                                                       
Query: 65  aatttaagttaagggtatgaaccaattcctaacctgttaaaggcagaagcctcttgatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatttaagttaagggtatgaaccaattcctaacctgttaaaggcagaagcctcttgatgt 324

                                                                       
Query: 125 gtcctaggatggatctaagggtaaaagatcagaagaggaataaactgaggaaagatattg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcctaggatggatctaagggtaaaagatcagaagaggaataaactgaggaaagatattg 384

                                                                       
Query: 185 ggctagggcttcctccttcaacaccagtcagtatggtggtgccggcaaagctcaccagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggctagggcttcctccttcaacaccagtcagtatggtggtgccggcaaagctcaccagct 444

                                                                       
Query: 245 ttcttggtttctgtatcacactgttattgcctctgggaacttagaaagaaagaaagaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttggtttctgtatcacactgttattgcctctgggaacttagaaagaaagaaagaaag 504

                                                                       
Query: 305 ctcctagcatctatatcccatcactactgaaaaaaattattacactcactttattatttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcctagcatctatatcccatcactactgaaaaaaattattacactcactttattatttt 564

                                                                       
Query: 365 gtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 624

                                                                       
Query: 425 gtgtgtgtctgtgtgtctgtgtgtctgtgtgtctgtgtgtgctatagcacatgtatgtag 484
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgt----ctgtgtgtctgtgtgtctgtgtgtctgtgtgtgctatagcacatgtatgtag 680

                                                                       
Query: 485 aggtcaaagaacaacttgcaggagtcagttctctccttcctccatatggatatgagagat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggtcaaagaacaacttgcaggagtcagttctctccttcctccatatggatatgagagat 740

                   
Query: 545 tgacctta 552
           ||||||||
Sbjct: 741 tgacctta 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)