BAC Information

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BAC

Clone NameMSMg01-509M08
Chromosome8 (Build37)
Map Location 100,423,954 - 100,424,527
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC333331, LOC546090, LOC636859, EG384885
Downstream geneLOC100041173, EG636915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509M08.T7 (MSMg01no509_m08.b1)MSMg01-509M08.TJ (MSMg01no509_m08.g1)
ACCAG583368AG583369
length757768
length of high quality
(start - end)
688 (70 - 757)574 (79 - 652)
definitionCHROMAT_FILE: MSMg01no509_m08.b1 PHD_FILE: MSMg01no509_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:07 2005CHROMAT_FILE: MSMg01no509_m08.g1 PHD_FILE: MSMg01no509_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATCCATTGCTTCTCATTCTAGCCCTCCTCACATTTTCAGGAC
GTAGGATAAATACATCCAGGTTCTTTGTCACAAGAAAGCACAGATGATAT
CTTGCCAGCTTCCTTAGGAAGTGGGTATTGCCCTCTGAAACCTAATGAGT
CAAATCCCTACTCTCAATGCGTAGCTTGGCATTCTGGTCTTCCAAGTCCC
CACAACAATGACCTATAGAAATCTATTTGAAACATCCTGTAACTGTTCTA
GCCCAACGTTCCAAACTGTTTCATCTTCTTACTACTTACCAGTTCCAAGT
GCTTAAGGGCAGCATTAGTTATTAGAGCAATGGCCCCAGTTCTTAGTATA
CATTTTCTATTTTAGTTATTTTCTTGTGCTTATCGTAAGAGTTACAGCTC
AGATGGAAAGATATCCTGGCAGTTGGAAACCACAAAGTCATAGCACACAG
CAAAACTCACACAAGAGATACACTGGGAGACAAAACTCTAGAAGAGTGGC
TACCTCTTCATAATGAGAAGTAGCAGACAGCTGGGCAAAGACATGATTTA
TAGAAACTTTCGTGGGGCAGGGGGATGCTTTCCAGGGTGGAGATTTCCAG
ATGGGGATTGGTGGAATTTTAAGTCCAAAGTTTGGGATTTTTAGTCTGTA
GGTTTTAGGGGATCTGTTTTCATTCTTAGGGAGGCTAATACGTTCTGTGG
GTTCAAT
NCCGAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCACATCTCTCTTTTCAGAA
TTTTTTTATTTGCTTCTCCCATTAGAAGTCCCCTCTCATTTGGTAGATAT
GAATTAATTTATTTTATTCTTCAGATAACAACAGTCATAAAATCTGTACT
GTATTTCAGATATCTGTCATACTTTCTAGCTGAAAATCGTTTCCTCTTAA
GGAAATGAATATTTCTTCTTAGAAGGTAACTATTTTATAACTTAGAAACT
TCAGCTTCTGTCTCTGCTTTTCCTGTCTTGTGATTTATATAATTACTTTT
ACTAGACCAGAATACTATCTGACCAAAGCAATGGGAGGAATCCACAAATG
TTTTTCTATAGCACGCCCTCTCAAACACAAGTCAGATTAATTGCTCAGTC
AATGTATTAAAATGTCAGCACTGTATGTTAAAGCTATTTGTGACAATAGA
GATGTCTAAAAAATCTATTATCCAATATAATATTCAGCAGAGAACTCTTA
AGAAAGTGAACATGGTTGCTGTAACAGAGCAAATGATTCAAAGTCATGTG
TGTCATCCAGATTGCACAGTCTAGTTACAAAACTAAAACATAAGTATAAT
GCCATACAAGTGACTTTGGCAGATAATCCTCTAGTATGAGGCAGGCAGTC
TCCTTGCTGGATGACACTTGACACTACAATAGAAAGTACATGTTAAAAGT
TGTCTGTAGACAATGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_m08.g1 MSMg01no509_m08.g1 CHROMAT_FILE:
MSMg01no509_m08.g1 PHD_FILE: MSMg01no509_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:07 2005
         (574 letters)



>mm_chr8_100423754_100424727
          Length = 974

 Score = 1056 bits (546), Expect = 0.0
 Identities = 567/574 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcacatctctcttttcagaatttttttatttgcttctcccattagaagtcccctctca 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcacatctctcctttcagaatttttttatttgcttctcccattagaagtcccctctca 260

                                                                       
Query: 61  tttggtagatatgaattaatttattttattcttcagataacaacagtcataaaatctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttggtagatatgaattaatttattttattcttcagataacaacagtcataaaatctgta 320

                                                                       
Query: 121 ctgtatttcagatatctgtcatactttctagctgaaaatcgtttcctcttaaggaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtatttcagatatctgtcatactttctagctgaaaatcgtttcctcttaaggaaatga 380

                                                                       
Query: 181 atatttcttcttagaaggtaactattttataacttagaaacttcagcttctgtctctgct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttcttcttagaaggtaactattttataacttagaaacttcagcttctgtctctgct 440

                                                                       
Query: 241 tttcctgtcttgtgatttatataattacttttactagaccagaatactatctgaccaaag 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcctgccttgtgatttatataattacttttactagaccagaatactatctgaccaaag 500

                                                                       
Query: 301 caatgggaggaatccacaaatgtttttctatagcacgccctctcaaacacaagtcagatt 360
           |||||||||||||||||| |||||||||||||||| |  |||||||||||||||||||||
Sbjct: 501 caatgggaggaatccacacatgtttttctatagcatgatctctcaaacacaagtcagatt 560

                                                                       
Query: 361 aattgctcagtcaatgtattaaaatgtcagcactgtatgttaaagctatttgtgacaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattgctcagtcaatgtattaaaatgtcagcactgtatgttaaagctatttgtgacaata 620

                                                                       
Query: 421 gagatgtctaaaaaatctattatccaatataatattcagcagagaactcttaagaaagtg 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagatgtttaaaaaatctattatccaatataatattcagcagagaactcttaagaaagtg 680

                                                                       
Query: 481 aacatggttgctgtaacagagcaaatgattcaaagtcatgtgtgtcatccagattgcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacatggttgctgtaacagagcaaatgattcaaagtcatgtgtgtcatccagattgcaca 740

                                             
Query: 541 gtctagttacaaaactaaaacataagtataatgc 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 gtctagttacaaaactaaaacataagtataatgc 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)