BAC Information

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BAC

Clone NameMSMg01-509P03
Chromosome8 (Build37)
Map Location 107,490,155 - 107,490,499
singlet/doubletsinglet
Overlap gene2210023G05Rik
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik
Downstream geneLOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P03.T7 (MSMg01no509_p03.b1)MSMg01-509P03.TJ (MSMg01no509_p03.g1)
ACCAG583500AG583501
length7631,198
length of high quality
(start - end)		345 (273 - 617)---
definitionCHROMAT_FILE: MSMg01no509_p03.b1 PHD_FILE: MSMg01no509_p03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:22 2005CHROMAT_FILE: MSMg01no509_p03.g1 PHD_FILE: MSMg01no509_p03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:22 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGAGAAGATGGG
CGGAATCTGAATTTTTCCCTAATCTGTATGCCTTTGAGTTCTTTCAGTTC
TGTGTGTAAAATGAATACAAGATAAGCTAATCTAAGTGTAGATTCTCCTC
CAGGGTGAGCAGATCACCCTGAAACTAGTGAGAATTGAGAAAAAGGTAGA
GGTGACTCAGTGGACATCGGGATATTTATTTCATTAACCTTCAGCATTGG
TTTTTAACACCCATCAGAACTTCCAGATGATCCCTGGTGTGGTGGATGGA
GAGTTCCTACCCAAGCATCTTTTTTTTTTGCTGGCCTCTGCTGATTTTCA
CCCTGTCCCCAGCATCATTGGTTTCAACAATGATGAGTATGGTTGGATCA
TCCCCAAAGTGAGGCTCACTTCCAATCCTCTGGGAATGTGGATACTCATA
TGCTAAGCAGTGGGGACTCAATACATCTTCACTCCAAGTTTGTGAGACCC
CATACTTAAGACTGTCTTCTCTCTCCCAGGTCATAGGCTCTACTCAGACA
ATAAAGGGAATAACCAGAGAGAACCTGCAGGCTGTCCTGAAGGATACAGC
ACCGCAAATGGTGAGACACCTCTGGTCTTGTCTAAGTAGATGGGTCCCTC
ATATCTCCTTCTCAGACAGCATCCCTATTAATAAAGGTCAGGAGATAGGT
ATGATGCTGTGTGGGGTCACCTCAGAGCAAGAACTTTTTCCCTATACCAT
ATGGTATCCCAGG

CTTATTCCTAGATTCCTTGCCACTGACACTCTAGTCTCCATCCACTCTCT
TTTCTCTCCACATTATCTCCCGCGCTGGGGCGGCGGTTATTGTCGTATTG
GTTGTGAGTAGGCGGACGCACTCGCGGCGCGATGGAGTGCCGCTTTCGGC
ACTGCGCTATACGCGAGTCACTACCACTACTTACACAGCCTTCTTATACT
CTCTCTTCTCACCGTGCTACTATCTGCGTTATACTCACTCATCTATTGTT
GCGAGCCGGGCCGTGATACTCATGTTGCAGTTCGCGTTTCTTGTCAACCA
GACTCAGAACGTTGTGCGATTCAACAAATAAATATACCAGTACAGCCGCG
TCCTCTGTATCTGCACTCGTTCGTTTCGTTCGGCGTTCTCCTCATTATAT
ATTCTCTGCGCCGCCGCGACGCCCGGATATTATATATACATCGCATGTTA
CATTANATGTTGCAACGATGACTCGACTATATATAATAACGCGCCGTGAT
GTAGAATATCCACATATGTATTATAATGGAGGAGTATGCACTCATAGTTA
TGTAGACGACAGCCTACGCGACGGCAGAACGAAGCCAAGGATGTACATCA
GTAGATCCACGAACTCATCTAACATTNCAAATACACATATTATAACTATA
CCACAATAACACATTCACCGTATTATAGTATAATAGCTTGTCGCGCTAGT
ATTTATAAGTCTTCTAATCGATTATATCATATTAATATTACGAGCGAGTG
TTGTGTCCGTCGTACGACAACACAGACGTTGAACATACAGTCCCACACAC
ACGAAGTCCGGTATAGTAGATTGCTGGATTTGAGCATAGATATATGATTA
TAATTACAGACTCATCTGTAACACAGAACAATGACGACTATAACTTAACA
TCACGCACGATTAGTGTACTCCATCGCACCATCATACTATGANGACGATG
ATAGTTCTAATCACTCCTATCGTACCCGTGACGCAGATAATAGAAGTTGT
ATACTACGTTTCGACACACACACTATTTCTACACTGCGCACAATGTTCTT
ATTGTGTCCGCTGACGAACATGATGAAGATGACGTATAACAGTCATCCCG
ACAATNAGCGATCTCCTTATCTCGTGTATCGTCTGCTATGTGATNGCACC
TGCCACAGCATACGTACTCAGTGTTACACTATGTGCACATACGCTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p03.b1 MSMg01no509_p03.b1 CHROMAT_FILE:
MSMg01no509_p03.b1 PHD_FILE: MSMg01no509_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:22 2005
         (345 letters)



>mm_chr8_107489955_107490699
          Length = 745

 Score =  603 bits (312), Expect = e-177
 Identities = 336/352 (95%), Gaps = 14/352 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagatgatccctggtgtggtggatggagagttcctacccaagcatctt-------tttt 53
           ||||||||||||||||||||||||||||||||||||||||||||||| |       |   
Sbjct: 201 ccagatgatccctggtgtggtggatggagagttcctacccaagcatcctcaggagct--- 257

                                                                       
Query: 54  ttttgctggcctctgctgattttcaccctgtccccagcatcattggtttcaacaatgatg 113
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ----gctggcctctgctgattttcaccctgtccccagcatcattggtttcaacaatgatg 313

                                                                       
Query: 114 agtatggttggatcatccccaaagtgaggctcacttccaatcctctgggaatgtggatac 173
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 agtatggttggatcgtccccaaagtgaggctcacttccaatcctctgggaatgtggatac 373

                                                                       
Query: 174 tcatatgctaagcagtggggactcaatacatcttcactccaagtttgtgagaccccatac 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcatatgctaagcagtggggactcaatacatcttcactccaagtttgtgagaccccatac 433

                                                                       
Query: 234 ttaagactgtcttctctctcccaggtcataggctctactcagacaataaagggaataacc 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttaagactgtcttctctctcccaggtcataggctctactcagacaataaagggaataacc 493

                                                               
Query: 294 agagagaacctgcaggctgtcctgaaggatacagcaccgcaaatggtgagac 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agagagaacctgcaggctgtcctgaaggatacagcaccgcaaatggtgagac 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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