BAC Information

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BAC

Clone NameMSMg01-510I24
Chromosome8 (Build37)
Map Location 39,583,389 - 39,643,782
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510I24.T7 (MSMg01no510_i24.b1)MSMg01-510I24.TJ (MSMg01no510_i24.g1)
ACCAG583970AG583971
length740747
length of high quality
(start - end)		671 (49 - 719)575 (81 - 655)
definitionCHROMAT_FILE: MSMg01no510_i24.b1 PHD_FILE: MSMg01no510_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:11 2005CHROMAT_FILE: MSMg01no510_i24.g1 PHD_FILE: MSMg01no510_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,583,389 - 39,584,057)(39,643,208 - 39,643,782)
sequence
GACCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCTAGACTTTCTGTCTGCCATAATTATACAAACTAACTCACTAAAA
TATTTACACTCTCTTCCCCACTTTTCTCCATTCTACTACTACCACACACA
CACATACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACCTCCAATTCTCAGACACCAATAAATTTCTATAT
GGACACAGTTTATATTTCAGGGTTCCTTGATAGAGCACACAGGTAGTTCT
TCAATCCCTTGATTGTTATTTTCCTTCCTCTCCTGCCAGGAACTTTCCTT
TACTTCCTAAAATTGCATTTTTTTCTCCAAATTACAAAGTCACTTTCAAA
TATGTACCTATGCCATACTTTGTCATTTAGCTATGATGGGGCATATACGT
TTTTCTAGGTGTATTAATTAAATTAAGCAGCCTCTCACCCACCAGCATGA
CAACTCTACCGTCAGACACCTTTGAATTTATATATCTATTTGCCCATTGT
TAAGTATTACAACTCAGTCCCCTTGACCAGACTGTGAACATTAGAGAGCA
AACTCAACACTGAACCCAATAGTTGGCTAACAAGTCCTAAATACCACATC
GATTTGCTAACTACCTATTGTTTTGCATATTTTGTTCAAAGACTTTGACA
AGAAATTCCATTGAATCTCANGGGAATTAACACTTTTTGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGGAACACAGTTTCNGATTACATACCAGTTTTCAT
TCCACAGACTCTAAGATGCTGGCAGCTCATGTTTCATGTGACCTGGACAG
AAGAAATAAAGTACAAATTAAGTTAAGCCCAAGTAACATGGCGACACAGA
ATGTCGAAATTATAGTGATCATGTTAAGAGGAAATCTACTTAAGAGATGG
GAATTCTAAACTATTTATTTAATAGAAAACTTGTAAGCATCTATGTGCTA
GAGAGGAGCAAAATGGTAATCTTACTTATGAAGCCCTTTTCAGATAAGTA
TTAATTCTAGGTGGAAGAGCTCAGACTTCATGTTATGCCTGAAGAAGTTG
AGGACATTCATTTCCTCTTACTTTTAATGGCCATGATTTATGTTTTTCAC
TATAGCTATCTCATAATTATTATGACATTACATACATATGGTTCTGTTAG
ATAGCCATGGCTGTGACATTGGTTCCTTAGCAACCAAAACTGTGCCTTCC
AAAGGAAAATAATTTGTCATGAAATACACTAGTACAAAATGCAGCCTTAT
CATAAGATATTGGTTAACCTGATGCATAGTAGGTTTTAGTAAGTGGTGAA
AATATCAGATTAAAATCAAAATATAAAATGACATTTTCCTGGTGGCTTCT
TAATGGTTGAAGTTGCCCTGTTTGTGTAAATATGACTGGACTGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_i24.b1 MSMg01no510_i24.b1 CHROMAT_FILE:
MSMg01no510_i24.b1 PHD_FILE: MSMg01no510_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:11 2005
         (671 letters)



>mm_chr8_39583187_39584257
          Length = 1071

 Score = 1286 bits (665), Expect = 0.0
 Identities = 668/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctagactttctgtctgccataattatacaaactaactcactaaaatatttacact 62
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctagacttgctgtctgccataattatacaaactaactcactaaaatatttacact 262

                                                                       
Query: 63  ctcttccccacttttctccattctactactaccacacacacacatacacacacacacaca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctcttccccacttttctccattctactactaccacacacacacatacacacacacacaca 322

                                                                       
Query: 123 cacacacacacacacacacacacacacacacacacacacacacacacctccaattctcag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cacacacacacacacacacacacacacacacacacacacacacacacctccaattctcag 382

                                                                       
Query: 183 acaccaataaatttctatatggacacagtttatatttcagggttccttgatagagcacac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acaccaataaatttctatatggacacagtttatatttcagggttccttgatagagcacac 442

                                                                       
Query: 243 aggtagttcttcaatcccttgattgttattttccttcctctcctgccaggaactttcctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aggtagttcttcaatcccttgattgttattttccttcctctcctgccaggaactttcctt 502

                                                                       
Query: 303 tacttcctaaaattgcatttttttctccaaattacaaagtcactttcaaatatgtaccta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tacttcctaaaattgcatttttttctccaaattacaaagtcactttcaaatatgtaccta 562

                                                                       
Query: 363 tgccatactttgtcatttagctatgatggggcatatacgtttttctaggtgtattaatta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgccatactttgtcatttagctatgatggggcatatacgtttttctaggtgtattaatta 622

                                                                       
Query: 423 aattaagcagcctctcacccaccagcatgacaactctaccgtcagacacctttgaattta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aattaagcagcctctcacccaccagcatgacaactctaccgtcagacacctttgaattta 682

                                                                       
Query: 483 tatatctatttgcccattgttaagtattacaactcagtccccttgaccagactgtgaaca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tatatctatttgcccattgttaagtattacaactcagtccccttgaccagactgtgaaca 742

                                                                       
Query: 543 ttagagagcaaactcaacactgaacccaatagttggctaacaagtcctaaataccacatc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttagagagcaaactcaacactgaacccaatagttggctaacaagtcctaaataccacatc 802

                                                                       
Query: 603 gatttgctaactacctattgttttgcatattttgttcaaagactttgacaagaaattcca 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gatttgctaactacctattgttttgcatattttgttcaaagactttgacaagaaattcca 862

                    
Query: 663 ttgaatctc 671
           |||||||||
Sbjct: 863 ttgaatctc 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 150
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no510_i24.g1 MSMg01no510_i24.g1 CHROMAT_FILE:
MSMg01no510_i24.g1 PHD_FILE: MSMg01no510_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:11 2005
         (575 letters)



>mm_chr8_39643008_39643982
          Length = 975

 Score = 1089 bits (563), Expect = 0.0
 Identities = 572/575 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattacataccagttttcattccacagactctaagatgctggcagctcatgtttcatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gattacataccagttttcattccacagactctaagatgctggcagctcatgtttcatgtg 716

                                                                       
Query: 61  acctggacagaagaaataaagtacaaattaagttaagcccaagtaacatggcgacacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 acctggacagaagaaataaagtacaaattaagttaagcccaagtaacatggcgacacaga 656

                                                                       
Query: 121 atgtcgaaattatagtgatcatgttaagaggaaatctacttaagagatgggaattctaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 atgtcgaaattatagtgatcatgttaagaggaaatctacttaagagatgggaattctaaa 596

                                                                       
Query: 181 ctatttatttaatagaaaacttgtaagcatctatgtgctagagaggagcaaaatggtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 595 ctatttatttaatagaaaacttgtaagcatctatgtgctagagaggagcaaaatggtaaa 536

                                                                       
Query: 241 cttacttatgaagcccttttcagataagtattaattctaggtggaagagctcagacttca 300
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ctaacatatgaagcccttttcagataagtattaattctaggtggaagagctcagacttca 476

                                                                       
Query: 301 tgttatgcctgaagaagttgaggacattcatttcctcttacttttaatggccatgattta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgttatgcctgaagaagttgaggacattcatttcctcttacttttaatggccatgattta 416

                                                                       
Query: 361 tgtttttcactatagctatctcataattattatgacattacatacatatggttctgttag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgtttttcactatagctatctcataattattatgacattacatacatatggttctgttag 356

                                                                       
Query: 421 atagccatggctgtgacattggttccttagcaaccaaaactgtgccttccaaaggaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atagccatggctgtgacattggttccttagcaaccaaaactgtgccttccaaaggaaaat 296

                                                                       
Query: 481 aatttgtcatgaaatacactagtacaaaatgcagccttatcataagatattggttaacct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatttgtcatgaaatacactagtacaaaatgcagccttatcataagatattggttaacct 236

                                              
Query: 541 gatgcatagtaggttttagtaagtggtgaaaatat 575
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 gatgcatagtaggttttagtaagtggtgaaaatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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