BAC Information

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BAC

Clone NameMSMg01-510N11
Chromosome8 (Build37)
Map Location 10,295,140 - 10,295,788
singlet/doubletsinglet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510N11.T7 (MSMg01no510_n11.b1)MSMg01-510N11.TJ (MSMg01no510_n11.g1)
ACCAG584181AG584182
length689725
length of high quality
(start - end)
---649 (77 - 725)
definitionCHROMAT_FILE: MSMg01no510_n11.b1 PHD_FILE: MSMg01no510_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:31 2005CHROMAT_FILE: MSMg01no510_n11.g1 PHD_FILE: MSMg01no510_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCTCAAATTGGGCGCTAACGATCCTATTCCAAGATGCGGGATTCCAC
TTACCATACGATGGAGAGAACCTTGAAAAATGTCACATCCTTATCTCAGG
AAATGCAATCAAACACCCTGAGATCCCACTCACACAGTCAGAATGGGTAG
ATCAAAATTCAGGGGACACCAGAAGGCTGGCGAGAATGGGAAAAAAAAGA
ACCACCCCTCCATGGTGGGGGGAAGGGCAGGCTGGTCCAACCCCTCTGGA
AATCAGCCTGGCGGTTCCTCAAAAAACTGGACATATTTTTTTTGGAGGAT
CCAGCATTACCTCTCCTGGGCATATATCCAAAAAATGCCCCACCAGGTAA
AAAGGACACTTGCTCCACTATGTCCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAAGAACCTAAATGCCCCTCACCAGAGGAATGGATACAGAAA
ATGTGGTACATCTACCCAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCTTCATCCTGA
TTGAGGTAACCCTTTCACAAAGAAACTCACACAATATGTATTCACTGATA
AGTGAATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTT
GCTAAACACATGAAACTCAGGAAGAATGAAAACTGAAGT
CTTTTTCGATGAAGTGGGTGGCCTGGGGGNCGCCTGGTTCTCAAATTTAG
GTGAACTATAGAATTTCCGAAAAATTCTTCCTTGGGAAGGACTTGAGTTA
GGAAGTGGTGGGCTCTGCTCTGGAACTTCTGGTAAGCTAAGAGGGACTGA
CTTCCACAAGAACACATGTAGACCCATGAGCTACAAGGTGAAGATAGAAG
ACTATTAATAGACCAGCAAATAGAAAGAGGGCAGTATTGGTATGATGTAA
CAAGAAATGCATGCTTACACTATACACCCAATTCTCCAAGCTCTTCTCAA
GCTCTGAAGTCTCTGGGTGTTTGACACATATTTAGCTCTAATGCAGGGGT
CAGGGGGGTTCTTGGTGGCCTTTGCTGGGGGCTGGTCCTAAGAAAGACCA
AGCCACAATTAGAAGTTGGTAACTTCATTTCTCAGGGAGGGTAGAGGGAT
GGAAATTGGTCTAGAAATAGTCATAGCCACAAGGAAGAACCTTCTACAGA
AGCCCAAGGAAAATGTGATTGTTGGTAAGAGTGGGCAGAGGCAAATTCAG
CCCATGAAAACAGAGCCTGTGTGGATACGAAGGGTAAAATCTGAAACAGG
GAATAGAAAGCCTGCCACAAAGACTTTAATTTGGACCCTGTCACTTCTAG
AAAATTGGTTGTGAACACATCAAGATCCTAACCCTTAAGAGACCTGAAAT
CTATTGGAAAGAGGCAGGAGACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_n11.g1 MSMg01no510_n11.g1 CHROMAT_FILE:
MSMg01no510_n11.g1 PHD_FILE: MSMg01no510_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:31 2005
         (649 letters)



>mm_chr8_10294940_10295988
          Length = 1049

 Score = 1216 bits (629), Expect = 0.0
 Identities = 644/649 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttccttgggaaggacttgagttaggaagtggtgggctctgctctggaacttctggtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttccttgggaaggacttgagttaggaagtggtgggctctgctctggaacttctggtaag 260

                                                                       
Query: 61  ctaagagggactgacttccacaagaacacatgtagacccatgagctacaaggtgaagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagagggactgacttccacaagaacacatgtagacccatgagctacaaggtgaagata 320

                                                                       
Query: 121 gaagactattaatagaccagcaaatagaaagagggcagtattggtatgatgtaacaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagactattaatagaccagcaaatagaaagagggcagtattggtatgatgtaacaagaa 380

                                                                       
Query: 181 atgcatgcttacactatacacccaattctccaagctcttctcaagctctgaagtctctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatgcttacactatacacccaattctccaagctcttctcaagctctgaagtctctgg 440

                                                                       
Query: 241 gtgtttgacacatatttagctctaatgcaggggtcaggggggttcttggtggcctttgct 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgacagacacatatttagctctaatgcaggggtcaggggggttcttggtggcctttgct 500

                                                                       
Query: 301 gggggctggtcctaagaaagaccaagccacaattagaagttggtaacttcatttctcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggggctggtcctaagaaagaccaagccacaattagaagttggtaacttcatttctcagg 560

                                                                       
Query: 361 gagggtagagggatggaaattggtctagaaatagtcatagccacaaggaagaaccttcta 420
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 gagggtagagggatggaaattggtctaaaaatagtcatagccacaaggaagaaccttcta 620

                                                                       
Query: 421 cagaagcccaaggaaaatgtgattgttggtaagagtgggcagaggcaaattcagcccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagaagcccaaggaaaatgtgattgttggtaagagtgggcagaggcaaattcagcccatg 680

                                                                       
Query: 481 aaaacagagcctgtgtggatacgaagggtaaaatctgaaacagggaatagaaagcctgcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaacagagcctgtgtggatacgaagggtaaaatctgaaacagggaatagaaagcctgcc 740

                                                                       
Query: 541 acaaagactttaatttggaccctgtcacttctagaaaattggttgtgaacacatcaagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaagactttaatttggaccctgtcacttctagaaaattggttgtgaacacatcaagat 800

                                                            
Query: 601 cctaacccttaagagacctgaaatctattggaaagaggcaggagaccaa 649
           ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 801 cctaacccttaagagacctgaaatctattggaaagaggcaggaaaccaa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)