BAC Information

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BAC

Clone NameMSMg01-511E21
Chromosome8 (Build37)
Map Location 113,257,529 - 113,257,900
singlet/doubletsinglet
Overlap geneBC060632
Upstream geneD8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14
Downstream gene2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511E21.T7 (MSMg01no511_e21.b1)MSMg01-511E21.TJ (MSMg01no511_e21.g1)
ACCAG584532AG584533
length729766
length of high quality
(start - end)
663 (48 - 710)442 (75 - 516)
definitionCHROMAT_FILE: MSMg01no511_e21.b1 PHD_FILE: MSMg01no511_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:08 2005CHROMAT_FILE: MSMg01no511_e21.g1 PHD_FILE: MSMg01no511_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTTTTTGTTACTTTCCTACAAGCATAAAATGAAATGAGTCAGA
CATGGAGGTACACCCCTAAGAATCCTAGCCTTTGGTAGGATGAAGCAGGG
AGTGTTGCTAGTTTGAGGTCAGTCTGTAATACACAGGAAAAACTTGCCCC
TGGTTTAAAAAAAAAAGTTGGGGCTGGAAGAATTGGCTCAGTGGTTATGA
GTACTGGCTGCTCTTCCAAATGACCGGGGTTTAATTCCCAGCACCCACAT
GGTAGCTCACAACTGTCTGTAACTCCAGTTCCAGGGGATCTGACACCCTC
ACACAGACATACAAGCAGGCAGAACACCAATGTGCATAAAATAAAAATAA
ATAAATCATTAAAAAATGTTAAAGAGCCAGGTGGTGGTGGCAGTGCACGC
CTTTAATCCCAGCACTTGGGAGCTGAGGCAGGTGGATTTCTGAGTTTGAG
GCCAGCCTGGTCTACAGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAG
AAACCCTGTCTCGAAAAACAAACTAACAAACAAACAAACTAACAAACAAA
CAAGTTAAAGAGTCAATTGAACAAAAGAGCTTTAATCCCTCTTGGGTAGT
AGTTAAAAAAATATAANAAAAAAGAAAAAAGAAAAAAAAAAAGAGACTCT
GAGAGACCGATGACGATGTGACATTCTTN
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATCAAACCTACAGATCATCCTAAGA
ATCACTTATCTGTTGTCTGGTGATCCATAACAAATTACTCTCCAATTTAG
CATCTTGTCAGGCAGCAAGCGTTTGCTCCCTGCACGGTGGCAGCCTGGCT
GGGTGGTCTTTGCTCAGGGGTCTCTCAGGAGGCTAGAGTCAGGCAGTCAT
CCAAATATCTAGTCTCCCCACACCGGACACTAGATAATCTGCTTCCAGAC
TGGGACTTGTGGTTTCTGGGAAGGCTTTTAGCTCCCTGTGGGCAGTTGGC
TAGGGCCTCAATTAGTCATCATGTGGACCTCTTCTTAGAGCCTTTTCCAA
CATGGCCTACTTCCCAAGAGTGAAAGATGTGAGGGAAAGGACGAGCCTGC
AAGAGAGAACAGAGTAGACAAGACAGAAGCTTGCAGGCATGCTCCTTCCC
TGCCTATTCTCAAGAGTGACAAAGTGCTTCTGCTTTATCTCTACCCAGCC
CTGGCCTGGAATTTCTTTAAGGAGGAAAACAATTAGAAGCTCTGGGGTTT
CCACCCCAAGCCTTGTGCATTCCTGGAAAGCTTTGTCCTACTGAACTACA
GACCCGTTTCCCCATTGCACCTCACCCCTGCTTTTTTGAGCCAAGGTCTC
TCTAAGTTGCTTAAGCTGCCCTGGGACTCACTGTCCTACCAAAGCGGGTG
TTGATCTTGTGCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_e21.b1 MSMg01no511_e21.b1 CHROMAT_FILE:
MSMg01no511_e21.b1 PHD_FILE: MSMg01no511_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:08 2005
         (663 letters)



>mm_chr8_113257529_113258591
          Length = 1063

 Score =  696 bits (360), Expect = 0.0
 Identities = 369/372 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctttttgttactttcctacaagcataaaatgaaatgagtcagacatggaggtaca 65
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gaattctttttgcaactttcctacaagcataaaatgaaatgagtcagacatggaggtaca 313

                                                                       
Query: 66  cccctaagaatcctagcctttggtaggatgaagcagggagtgttgctagtttgaggtcag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cccctaagaatcctagcctttggtaggatgaagcagggagtgttgctagtttgaggtcag 253

                                                                       
Query: 126 tctgtaatacacaggaaaaacttgcccctggtttaaaaaaaaaagttggggctggaagaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tctgtaatacacaggaaaaacttgcccctggtttaaaaaaaaaagttggggctggaagaa 193

                                                                       
Query: 186 ttggctcagtggttatgagtactggctgctcttccaaatgaccggggtttaattcccagc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttggctcagtggttatgagtactggctgctcttccaaatgaccggggtttaattcccagc 133

                                                                       
Query: 246 acccacatggtagctcacaactgtctgtaactccagttccaggggatctgacaccctcac 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 acccacatggtagctcacaactgtctgtaactccagttccaggggatctgacaccctcac 73

                                                                       
Query: 306 acagacatacaagcaggcagaacaccaatgtgcataaaataaaaataaataaatcattaa 365
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  acagacatacaagcgggcagaacaccaatgtgcataaaataaaaataaataaatcattaa 13

                       
Query: 366 aaaatgttaaag 377
           ||||||||||||
Sbjct: 12  aaaatgttaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)