BAC Information

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BAC

Clone NameMSMg01-511N18
Chromosome8 (Build37)
Map Location 59,612,969 - 59,613,519
singlet/doubletsinglet
Overlap genenone
Upstream geneHpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355
Downstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511N18.T7 (MSMg01no511_n18.b1)MSMg01-511N18.TJ (MSMg01no511_n18.g1)
ACCAG584955AG584956
length724730
length of high quality
(start - end)
435 (89 - 523)551 (81 - 631)
definitionCHROMAT_FILE: MSMg01no511_n18.b1 PHD_FILE: MSMg01no511_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:50 2005CHROMAT_FILE: MSMg01no511_n18.g1 PHD_FILE: MSMg01no511_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAAGAGGACCGC
GGAATTCATTGTTTCCAAGGCACACGTGTCCAAACTGATGGGACATAGTG
AAAGCAGTGCTAAGAGAAAAACTCATAGCACCAAGTGCCTTCATAAAGAA
ATTGAAAAGATCCTACACTAGCAACATAACAGCACACAAGAGAGCTCTAG
AACAGAAAGAAGAAACACACCCAAGAGGAGTAGACAGGAGGAAATAATCA
AACCCAGGGCTGAAATAAACCAATTAGAAACAAAGAGAGCGATACAAAGA
ATAAATAAAACTAAGAGCTGGTTTTTTGGGAAAATCATAAGATAGATAAA
CCCATAGCAAAACTAATGAAAGGACACAGAGACAGTATCCAAATTAACTA
AATCACAAATGGAGAGAGAGACATAACAATAGAAACTGAGGAAATTAAAA
AAAATTATCAGATCTTACTACAAAAGCAATCTACTGATTCGATGCAATCC
CCATCAAATTTCCAACTCATTTCTTCACAGATATGGCATGAGCAATTCTC
AGCTTCATATGGGAAAACGAAAAGGCCAGGATAGTGAAAACTAGTCTCAA
CAATAAAAGAATTTTTGGTGGAATAACCAACCTAGACCTCAAGCTGTACT
TCAGAGCAATAGTGATAAAAAGACCACATGGCATTGGTACAGAGACAGAC
AGGTTGATCAATGTGATAGAACTT
TTTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGCATGGGATATTTT
TCTTGTTTTTTTGAGGAAAACATTTAGCATTAATGGAGTTTTGATATAAT
TAATCACTTCTATTCTGTAGTATCCCTCTATCAAGCAAATTCCTTGTGTT
TCAGTTTCTTGGATACTACTAGAAGAACTCTGTATCCATTGAAGTCAACG
ACAAAACAGAAACACGCTAAATAATGTGATTAAAGTTGTTAAAAGCCAAA
ATAAACACTTATAATTATCTCAAGGAAAAACGGTGTTAGGCAAGCGTGGT
CTCTATAAAGGGGGACTCAGTGTGCGTCTTTTAGACCCTGCTGCACAATA
GATCATAGTTTAAAGTCTGTTAACAGACCCCTGATGGCTGGGCTAGGTAG
CTTGTGGTTTTCTTCTGAGCCTATTGGCACAAGATGAATTTATGTGTGAG
GTGCAAATTGGAAGTTGCCTTCTCTTGGTGCCCTTGGCAGAACAGAAATC
ATACTGTAGGGCTAACAGCAGGAAGTACATTGCTTTGAAATTACCCAGCA
GGGTGTCTACTTGCTTCACTCGCTGCCTGTGAGAAAGGGGCTTATACTGT
CTGGCCATGATTAAAATCAAAGTGTAAGCTGCTTTGTTGGGTGCCGTAAA
CTTATGTGAAAACACGAACCATCTGGAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_n18.g1 MSMg01no511_n18.g1 CHROMAT_FILE:
MSMg01no511_n18.g1 PHD_FILE: MSMg01no511_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:50 2005
         (551 letters)



>mm_chr8_59612769_59613719
          Length = 951

 Score = 1050 bits (543), Expect = 0.0
 Identities = 549/551 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttgcatgggatatttttcttgtttttttgaggaaaacatttagcattaatggagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tctgttgcatgggatatttttcttgtttttttgaggaaaacatttagcattaatggagtt 692

                                                                       
Query: 61  ttgatataattaatcacttctattctgtagtatccctctatcaagcaaattccttgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttgatataattaatcacttctattctgtagtatccctctatcaagcaaattccttgtgtt 632

                                                                       
Query: 121 tcagtttcttggatactactagaagaactctgtatccattgaagtcaacgacaaaacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tcagtttcttggatactactagaagaactctgtatccattgaagtcaacgacaaaacaga 572

                                                                       
Query: 181 aacacgctaaataatgtgattaaagttgttaaaagccaaaataaacacttataattatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aacacgctaaataatgtgattaaagttgttaaaagccaaaataaacacttataattatct 512

                                                                       
Query: 241 caaggaaaaacggtgttaggcaagcgtggtctctataaagggggactcagtgtgcgtctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caaggaaaaacggtgttaggcaagcgtggtctctataaagggggactcagtgtgcgtctt 452

                                                                       
Query: 301 ttagaccctgctgcacaatagatcatagtttaaagtctgttaacagacccctgatggctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttagaccctgctgcacaatagatcatagtttaaagtctgttaacagacccctgatggctg 392

                                                                       
Query: 361 ggctaggtagcttgtggttttcttctgagcctattggcacaagatgaatttatgtgtgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggctaggtagcttgtggttttcttctgagcctattggcacaagatgaatttatgtgtgag 332

                                                                       
Query: 421 gtgcaaattggaagttgccttctcttggtgcccttggcagaacagaaatcatactgtagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtgcaaattggaagttgccttctcttggtgcccttggcagaacagaaatcatactgtagg 272

                                                                       
Query: 481 gctaacagcaggaagtacattgctttgaaattacccagcagggtgtctacttgcttcact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 271 gctaacagcaggaagtacattgctttgaaattacccagcagggtgtctacttgctgctct 212

                      
Query: 541 cgctgcctgtg 551
           |||||||||||
Sbjct: 211 cgctgcctgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)