BAC Information

Click to search

BAC

Clone NameMSMg01-512H24
Chromosome8 (Build37)
Map Location 33,795,494 - 33,795,998
singlet/doubletsinglet
Overlap genenone
Upstream geneEG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
Downstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512H24.T7 (MSMg01no512_h24.b1)MSMg01-512H24.TJ (MSMg01no512_h24.g1)
ACCAG585445AG585446
length1,073781
length of high quality
(start - end)
---505 (65 - 569)
definitionCHROMAT_FILE: MSMg01no512_h24.b1 PHD_FILE: MSMg01no512_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:40 2005CHROMAT_FILE: MSMg01no512_h24.g1 PHD_FILE: MSMg01no512_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCCCCCTGCGGACCACGGTCTGCAACTTCTACATCCGGGGCTCCCC
CGTGCCCCCATTTGTCTCCATCCCCGCCCACGGAGCGAGGGCGGAACCCC
GCTGACCTGACATATTTAAAAGAACCATTTCGTGTTCGTTCCCTTCTTTC
CAAACTTTTTAAGAACCTCTTCCTTGTTCATTTACGCGGCTCCGACCGGC
CGCCTCAGCGTAAGAACTCAGAACATCCCCTTTTTCCGTCAACCACACAA
CAAAACGAGGGGGGGGGTGGGTGTAGTCGCCCTCTTCTTCCGCACCATGC
GGATCGGTGCGTGTCGAGGGGCACGCGGGCGCCGGCTATCATCTCTTAAT
TTCACTCAATCCCCCCATACCCTACCGTGCACGAGCACGTGCATAAAAAA
GAGAAGAACATTGCATGACACATCGAGAACCCCGGCGATGAAAAACCAGA
TCGAAGCGTTTATTTGGGTGCGCAAAGAGTAGCGTAACCGCAAGCCCGCC
CAGGTGGCGTAGATGCGCCCCGCCACCCCACAGTATTATCTACAGCTCAA
CACAGATAAATGACCTATCTCACCGCCTAGAGACTGAAGTATCTGGGGGC
TGCGGTTCCATTGTGCCCACTGTCTACCCTTTTTGTGTGCTCACAAATAA
GTATCAGAAACGAAAAATGAATGACTTACCCACCCGCGTCTACCCGCGTA
CATTAAAGATATTTGTCCTTATATGTCAAGACTCCCACCCGTTATCACAT
CGCCCTGCCCTGCCACAAGCAAACACATGAAAAACATCGCACACTCTAAC
GTACTACTATTGCGTTCGTTGTACGTCCTGCGATTGACATGGAAAAAACA
CGTCCCCCTGTCACATGTCCTACGCGCCCAATAAACCACACCCCCCGTAT
TCGCGCCAATTAGGGCGGCTATTTTTTATGGAAAACCTATATTCACATAT
CACTAAGGTAATAATTGAGTATTAAACCCCCGGAACAATAAATAAAATCC
TACATCTTTCGATCTCAAACTGCCCCTCCTTTGCGCGGTATGGACAGCCA
CGGACGTAGCGCGAACACACAAA
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTATTAACTGTCGAGCCATCTCTTCAGTCCCAGGAAA
GAAAAACCTTTAGCCTTTTATTTTATTTATTACTGTTAGCAAGATTTATA
CTTAGATATGAAATCAACCAGATTTCTAGCAAGACTGACTTTACTTAATA
ATTTTCTGCGTGTTTTATGGCTATGAAAATCTTTTCATTCTGAGAGGGAA
GGAAGGGGATATTTGAAATGTAAATAAAGAAAATATCCAATAAAAAGTTT
TATGAGAAAAACTGTTGATTTATCATTATTTTTATGTATCAGACACATTT
AAGATGACTTTGTATGGGTTTGTCATTTTATTAAAAATAACAACTGAGCA
AAGTGCATAACCTTGAACTAAATGTTTCTTTTATGCACGAAACTACATAC
ATGATATGTAATATATATTTGTATAACACTATATATATGTATATATATAT
ATATATATGTAGTCATTTAAGAACAGAAAACGTAAAAGACTGAGTTCATA
ACACTGAAGGTTTTTATTGCTTCATAGCCACAGAGTCATTCTGTANGGTC
ATTTCTGTAAGATACAGACATGAGCTAACACCTATTGATCATCTTGGCCT
CCTTAGAAGCAGCTAACCAGACTGAATTTTTTAAACATATACAGTAATGA
ACTGGAAATCTTCCCATTTGATTAAGTGCTGCTTAGCACAGAGAAAGTCT
AGAGTTATCTCTAGCCCTCATAAAAGGCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_h24.g1 MSMg01no512_h24.g1 CHROMAT_FILE:
MSMg01no512_h24.g1 PHD_FILE: MSMg01no512_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:40 2005
         (505 letters)



>mm_chr8_33795178_33796082
          Length = 905

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattaactgtcgagccatctcttcagtcccaggaaagaaaaacctttagccttttatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tattaactgtcgagccatctcttcagtcccaggaaagaaaaacctttagccttttatttt 762

                                                                       
Query: 61  atttattactgttagcaagatttatacttagatatgaaatcaaccagatttctagcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 atttattactgttagcaagatttatacttagatatgaaatcaaccagatttctagcaaga 702

                                                                       
Query: 121 ctgactttacttaataattttctgcgtgttttatggctatgaaaatcttttcattctgag 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 701 ctgactttacttaataattttctgagtgttttatggctatgaaaatcttttcattctgag 642

                                                                       
Query: 181 agggaaggaaggggatatttgaaatgtaaataaagaaaatatccaataaaaagttttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agggaaggaaggggatatttgaaatgtaaataaagaaaatatccaataaaaagttttatg 582

                                                                       
Query: 241 agaaaaactgttgatttatcattatttttatgtatcagacacatttaagatgactttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agaaaaactgttgatttatcattatttttatgtatcagacacatttaagatgactttgta 522

                                                                       
Query: 301 tgggtttgtcattttattaaaaataacaactgagcaaagtgcataaccttgaactaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgggtttgtcattttattaaaaataacaactgagcaaagtgcataaccttgaactaaatg 462

                                                                       
Query: 361 tttcttttatgcacgaaactacatacatgatatgtaatatatatttgtataacactatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttcttttatgcacgaaactacatacatgatatgtaatatatatttgtataacactatat 402

                                                                       
Query: 421 atatgtatatatatatatatatatgtagtcatttaagaacagaaaacgtaaaagactgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atatgtatatatatatatatatatgtagtcatttaagaacagaaaacgtaaaagactgag 342

                                    
Query: 481 ttcataacactgaaggtttttattg 505
           |||||||||||||||||||||||||
Sbjct: 341 ttcataacactgaaggtttttattg 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)