BAC Information

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BAC

Clone NameMSMg01-513A12
Chromosome8 (Build37)
Map Location 31,360,096 - 31,360,694
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041237, EG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513A12.T7 (MSMg01no513_a12.b1)MSMg01-513A12.TJ (MSMg01no513_a12.g1)
ACCAG585852AG585853
length735749
length of high quality
(start - end)
689 (42 - 730)643 (70 - 712)
definitionCHROMAT_FILE: MSMg01no513_a12.b1 PHD_FILE: MSMg01no513_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:23 2005CHROMAT_FILE: MSMg01no513_a12.g1 PHD_FILE: MSMg01no513_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGACCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAA
TGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTT
TGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCC
TGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAAT
GTGTTCTTGGATTCGGTTGGCGAGAATTTTATTGAGGATTTTTGCATCAA
TATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTC
TGTGATTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGAGTTGGGTAG
AGTACCATCTACTTCTATCTTGTGAAAAAGTTTGTGCAGAACTGGAATTA
GATCTTCTTTGAAGGTCTGACAGAACTCTGCAATAAACCCATCTGGTCCT
GGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGG
GGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCAACTTGGTAC
CTGGTATCTGTCCAGAAATTTGTCCATTTAGTCCAGGTTTTCCAGTTTTG
TTGAGTATAGCCTTTTGTAGAAGGATCTGATGGTGTTTTGGATTTCTTCA
GGATCTGTTGTTATGTCTCCCTTTTCAGTTCTGAA
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGTGTGTGAATGGATGTGGTTATTTATGTAT
ATACATGCATGGGCAGAGGGGTATGAGATGGCATGTAGAGGCAGAGACAG
GAGGTCATTTCAATCTCAGGTAGAGTTCCCCAGGAGTCACTAAACTTTTT
TAGTAACAAAGAGTTTCTTACTGGCCTGGAACTCTCTGATTCAGCTGGGC
TGGCTGGCCATAAGCCCTGGAATCTGCCTATATCTCCTGACACTTGCTTC
CAGTGTTAGGTTTTCCAAAATAATCCTTTAGAAATACAGTTTGAGTCCTG
AATTCCCAGGCTGAAAGCACTTTAGCCACCTCCTTTGATCTGTAGCTGAG
TTCAAACATTCACTTCCAGCCAAAGTGTTAAGTCCTGTATTTCTTCTCAG
TCTCTGGATTAAGTAAAGCTCAATGGTAGAACACTTTCATAGTGTACACG
ATGTCTTGGGTTTGATCCCAAATACCATTAAATATCAAGAATATCATACC
CAAGCTACAATCTCTGATACAACCCTGGTAGGGGAATAACACTGAGTAAT
AGAAATATCTGCTTTTATGAAACTATTCTTTTTACTAGAAGCATTTTTTT
TCTGCTTTGAATGAACTTCATGTTTCAACATAGATCTAAGTATGTTTTGA
TAGGGAATGAGCACTAGAACTTTTGTGGAGGGTGTTCATTTTCTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_a12.g1 MSMg01no513_a12.g1 CHROMAT_FILE:
MSMg01no513_a12.g1 PHD_FILE: MSMg01no513_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:24 2005
         (643 letters)



>mm_chr8_31359652_31360694
          Length = 1043

 Score = 1158 bits (599), Expect = 0.0
 Identities = 599/599 (100%)
 Strand = Plus / Minus

                                                                        
Query: 45   cagaggggtatgagatggcatgtagaggcagagacaggaggtcatttcaatctcaggtag 104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 cagaggggtatgagatggcatgtagaggcagagacaggaggtcatttcaatctcaggtag 984

                                                                        
Query: 105  agttccccaggagtcactaaacttttttagtaacaaagagtttcttactggcctggaact 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983  agttccccaggagtcactaaacttttttagtaacaaagagtttcttactggcctggaact 924

                                                                        
Query: 165  ctctgattcagctgggctggctggccataagccctggaatctgcctatatctcctgacac 224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923  ctctgattcagctgggctggctggccataagccctggaatctgcctatatctcctgacac 864

                                                                        
Query: 225  ttgcttccagtgttaggttttccaaaataatcctttagaaatacagtttgagtcctgaat 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863  ttgcttccagtgttaggttttccaaaataatcctttagaaatacagtttgagtcctgaat 804

                                                                        
Query: 285  tcccaggctgaaagcactttagccacctcctttgatctgtagctgagttcaaacattcac 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803  tcccaggctgaaagcactttagccacctcctttgatctgtagctgagttcaaacattcac 744

                                                                        
Query: 345  ttccagccaaagtgttaagtcctgtatttcttctcagtctctggattaagtaaagctcaa 404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743  ttccagccaaagtgttaagtcctgtatttcttctcagtctctggattaagtaaagctcaa 684

                                                                        
Query: 405  tggtagaacactttcatagtgtacacgatgtcttgggtttgatcccaaataccattaaat 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683  tggtagaacactttcatagtgtacacgatgtcttgggtttgatcccaaataccattaaat 624

                                                                        
Query: 465  atcaagaatatcatacccaagctacaatctctgatacaaccctggtaggggaataacact 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623  atcaagaatatcatacccaagctacaatctctgatacaaccctggtaggggaataacact 564

                                                                        
Query: 525  gagtaatagaaatatctgcttttatgaaactattctttttactagaagcattttttttct 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563  gagtaatagaaatatctgcttttatgaaactattctttttactagaagcattttttttct 504

                                                                       
Query: 585  gctttgaatgaacttcatgtttcaacatagatctaagtatgttttgatagggaatgagc 643
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503  gctttgaatgaacttcatgtttcaacatagatctaagtatgttttgatagggaatgagc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space:   653889
Effective search space used:   653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)