Query= MSMg01no513_c11.b1 MSMg01no513_c11.b1 CHROMAT_FILE:
MSMg01no513_c11.b1 PHD_FILE: MSMg01no513_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:33 2005
(651 letters)
>mm_chr8_58076966_58078016
Length = 1051
Score = 1131 bits (585), Expect = 0.0
Identities = 637/661 (96%), Gaps = 14/661 (2%)
Strand = Plus / Plus
Query: 5 gaattcaattgtatgctttaaatatgctttaattactggcctgtttattgccatgtatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattcaattgtatgctttaaatatgctttaattactggcctgtttattgccatgtatag 250
Query: 65 aaaattctttaaattttctgtgtaatatatatatatatatatatatatacatatatatat 124
||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||| ||
Sbjct: 251 aaaattctttaaattttctgtgtaatatatatatatagatagatagatagatagatagat 310
Query: 125 atata--ta--tata--tataaataagtgatatttaaagattccttgtacagcacaatta 178
| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agatagatagatatagatataaataagtgatatttaaagattccttgtacagcacaatta 370
Query: 179 tacactctacttcccaaaggatactataaataaaagtacataaaagtaacattgtatgga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tacactctacttcccaaaggatactataaataaaagtacataaaagtaacattgtatgga 430
Query: 239 ctgaacaggttatatttgtgtgtgtgtgtgtgtgt--------ttgtatgcatttacaca 290
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 ctgaacaggttatatttgtgtgtgtgtgtgtgtgtgtgtgtgtttgtatgcatttacaca 490
Query: 291 tgcacataaatatatgtctgtaataaaaattagtgaaaaaagaggccattaatttgaagg 350
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 491 tgcacataaatatatgtctgtaataaaaattagtgaaaaaagaggccatgaatttgaagg 550
Query: 351 agtgctcaggggggcatattggagatggtggagggaggaaatggaaggaaaaatttaatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agtgctcaggggggcatattggagatggtggagggaggaaatggaaggaaaaatttaatt 610
Query: 411 gcaaatattaaaataataaaataaaagtgctgatatttccttgcatttatttttactctg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcaaatattaaaataataaaataaaagtgctgatatttccttgcatttatttttactctg 670
Query: 471 ttgctttacttagttacctcgaaactgtaattgttgttaattgtttttaagcttggtaac 530
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 671 ttgctttacttagttacctcgaaactgtaattgttgttaaatgtttttaagcttggtaac 730
Query: 531 aatctcaaatttaccctagtcaccaaatatgttttatttattgttagaatagctataaca 590
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aatctcaaatttaccttagtcaccaaatatgttttatttattgttagaatagctataaca 790
Query: 591 tttattcatttagtaaaatacttgttaattagtaggaaggagtcctttttctctactcag 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tttattcatttagtaaaatacttgttaattagtaggaaggagtcctttttctctactcag 850
Query: 651 a 651
|
Sbjct: 851 a 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_c11.g1 MSMg01no513_c11.g1 CHROMAT_FILE:
MSMg01no513_c11.g1 PHD_FILE: MSMg01no513_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:33 2005
(630 letters)
>mm_chr8_58238833_58239863
Length = 1031
Score = 1093 bits (565), Expect = 0.0
Identities = 589/597 (98%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 1 ctaccacaaatttctgtaaataattttctagttaacattattgcaaacagactcaattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ctaccacaaatttctgtaaataattttctagttaacattattgcaaacagactcaattta 719
Query: 61 gctaaccttcatatatacttaaatacaaatacctcaaaatcaataaaagatgacatttat 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 718 gctaaccttcatatatacttaaatacaaatacctcaaaatcaataaaaggtgacatttat 659
Query: 121 agaacatgataaaatataactcattggtgataaaacactacacataaaatttaacagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agaacatgataaaatataactcattggtgataaaacactacacataaaatttaacagcca 599
Query: 181 ataacgagtcatttgtaaattttttgaaga-ttttaatcttcttatccatagtatctatt 239
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 598 ataacgagttatttgtaaattttttgaagatttttaatcttcttatccatagtatctatt 539
Query: 240 gatgactgtgaccaatgacaagaaataaaaatagcaacacatacattttaattatagttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gatgactgtgaccaatgacaagaaataaaaatagcaacacatacattttaattatagttt 479
Query: 300 caatctaatattcacaaaaaagagtataatatcaagtatatgcacatctacttgacattt 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 478 caatctaatattcacaaaaaggagtataatatcaagtatatgcacatctacttgatattt 419
Query: 360 aaactcataaaagttaattaagaagttctattttgccttgaaggatttggagatgttatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aaactcataaaagttaattaagaagttctattttgccttgaaggatttggagatgttatt 359
Query: 420 ctatctcctggagaacagtcggttcaagttgttccttctatagtggaaatttaccagagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctatctcctggagaacagtcggttcaagttgttccttctatagtggaaatttaccagagt 299
Query: 480 cttgccatggatggcctatttagacaactttccagcctgaaaatctgaattgcaactata 539
|||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 298 cttgccatggatggtctatttagacaacttttcagcctgaaaatctgaattacaactata 239
Query: 540 ctctgagcaaattaatatgtgaagacacttagttgttcatatatatatatatatata 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctctgagcaaattaatatgtgaagacacttagttgttcatatatatatatatatata 182
Score = 74.2 bits (38), Expect = 3e-17
Identities = 44/48 (91%), Gaps = 4/48 (8%)
Strand = Plus / Plus
Query: 578 atatatatatatatatatatatatatatatata----tatatatatat 621
||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5 atatatatatatatatatatatatatatatataaaaatatatatatat 52
Score = 72.3 bits (37), Expect = 1e-16
Identities = 43/47 (91%), Gaps = 4/47 (8%)
Strand = Plus / Plus
Query: 579 tatatatatatatatatatatatatatatatata----tatatatat 621
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4 tatatatatatatatatatatatatatatatataaaaatatatatat 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 137
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 6
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
