BAC Information

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BAC

Clone NameMSMg01-513E11
Chromosome8 (Build37)
Map Location 55,465,399 - 55,466,043
singlet/doubletsinglet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107, Vegfc
Downstream geneSpcs3, Asb5, Spata4, Wdr17, Gpm6a, LOC667624, LOC100040156, LOC100040382, LOC100040392, EG546212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513E11.T7 (MSMg01no513_e11.b1)MSMg01-513E11.TJ (MSMg01no513_e11.g1)
ACCAG586036AG586037
length726737
length of high quality
(start - end)
685 (42 - 726)645 (72 - 716)
definitionCHROMAT_FILE: MSMg01no513_e11.b1 PHD_FILE: MSMg01no513_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:43 2005CHROMAT_FILE: MSMg01no513_e11.g1 PHD_FILE: MSMg01no513_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGTCTAGTATTGGTTGTTAACTTAGCCATCTCCCTGTGGCTGGTGAGG
TCATGAACCCTAGAGGAGAACCTACTGCTGTCCTTTTACAAAATCAGTCA
CATTCCTTACTGAATACTTACTCTTTTAGTCACAGAGAAGTGTAGCTTTC
ATCCCTTCACTAAAAAAGGTTCCTTTTTGTAGCACAGACCATCGAATAAA
TCTTCAACCAGTCAAAATATAGAGAATCAGTGAGTATGGGATGCCCAACT
TTAACTGCTTCATTCACAGCACAACCCTCCACCTAAGTCTCATGTACCAT
TAAGTACAGAGCAAGGGGACAGAAACACTGTAAGAGCCAGAGGACCCGGA
TATCTGCTGTGAGATGCTGTCTTCTATAAATGACTGGGAGCTGCACTCAT
AAAATTTTAACAATGATCACCTAAACAAGATCTCCATAACACCAGTTGAC
ATTCCTCAGTAGATGATGAAATCTCATAAGGCTGTATCCTTTAGATGAAG
ATCTACAGGTAATTAATTTTCCCTAGAGAGGGTGAGTAAGTCTTCTCCAG
GGATATGTTATGCAATCCTAAGCGATCAGCCCTGAACACATACAAACCCA
TAGAAGTGACACTAAATGGACTCAGAAAGTTTTTTTTTTAATATAGGCAT
ACACATATACACACATGTAGCAACAA
GACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAATCTCCTTGCCTCTACTTCCCCAATA
TTGAGATTCTAGGAATGATCCATCACACTTTCCCATCATTTGTTCAATTT
CTAGAAAATTTCTTCAGTTTTCCATTTCAATTTTTAACACTTATTGGAAT
ATTTTCTGATATTTAAAATAATAAAAACATTGAAATTACTAGTAATAATG
ATTTTTTAGAAGGCAGACAGTTTGGAAGATTTAGAACTATCAGGAACAAC
CAACTCTGTAAATCCCAAGACAATCAACAAGAAAAGCCAGAGAATGTTTT
TAGTGTATCTAGACATGGGTGGGATCCTCTGAGTGTTTGACAGCCACGGG
TGAATGCATGGGCCACTGGACAAAGGGAAGTGAAATCTGATAACGTGTTG
GGTTTTACAACCCTTGCAAGCAAGAATCCAAGAAGAAAGGCAACTAGGAG
GAAAGATCACTTCTTCGTTCACTTTGATCATCCTGTAATTATTGTGGTCT
GTGCTTCATAAGCTGCTTAGCTTCTTTCTATACCCAGAGGACAAAAAGAC
ATTTTATAATATTATATTTCATTCACAGAAAATATCAAAACTTCAGTAAT
TCATTTACAAACTAATGGTGTGTGGAAAAGAAGCTAACTTTTTTTCTTCT
TGATGATTCTTCTCAATAAAACCAAATTGACTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_e11.g1 MSMg01no513_e11.g1 CHROMAT_FILE:
MSMg01no513_e11.g1 PHD_FILE: MSMg01no513_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:43 2005
         (645 letters)



>mm_chr8_55465199_55466243
          Length = 1045

 Score = 1147 bits (593), Expect = 0.0
 Identities = 632/645 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaatctccttgcctctacttccccaatattgagattctaggaatgatccatcacacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaatctccttgcctctacttccccaatattgagattctaggaatgatccatcacacttt 260

                                                                       
Query: 61  cccatcatttgttcaatttctagaaaatttcttcagttttccatttcaatttttaacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccatcatttgttcaatttctagaaaatttcttcagttttccatttcaatttttaacact 320

                                                                       
Query: 121 tattggaatattttctgatatttaaaataataaaaacattgaaattactagtaataatga 180
           |||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 321 tattggaaaattttctgatatttaaaataataacagcattgaaattactagtaataatga 380

                                                                       
Query: 181 ttttttagaaggcagacagtttggaagatttagaactatcaggaacaaccaactctgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttttagaaggcagacagtttggaagatttagaactatcaggaacaaccaactctgtaa 440

                                                                       
Query: 241 atcccaagacaatcaacaagaaaagccagagaatgtttttagtgtatctagacatgggtg 300
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 atcccaagacaatcagcaagaaaagccagagaatatttttagtgtatctagacatgggtg 500

                                                                       
Query: 301 ggatcctctgagtgtttgacagccacgggtgaatgcatgggccactggacaaagggaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatcctctgagtgtttgacagccacgggtgaatgcatgggccactggacaaagggaagt 560

                                                                       
Query: 361 gaaatctgataacgtgttgggttttacaacccttgcaagcaagaatccaagaagaaaggc 420
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaatctgataatgtgatgggttttacaacccttgcaagcaagaatccaagaagaaaggc 620

                                                                       
Query: 421 aactaggaggaaagatcacttcttcgttcactttgatcatcctgtaattattgtggtctg 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactaggaggaaagatcactccttcgttcactttgatcatcctgtaattattgtggtctg 680

                                                                       
Query: 481 tgcttcataagctgcttagcttctttctatacccagaggacaaaaagacattttataata 540
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 681 tgcttcataagctgcttagcttctttctgtacccagaggacaagaagacattttataata 740

                                                                       
Query: 541 ttatatttcattcacagaaaatatcaaaacttcagtaattcatttacaaactaatggtgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttatatttcattcacagaaaatatcaaaacttcagtaattcatttacaaactaatggtgt 800

                                                        
Query: 601 gtggaaaagaagctaactttttttcttcttgatgattcttctcaa 645
           |||||  |||||||||||||||||||||| |||||||||||||||
Sbjct: 801 gtggaggagaagctaactttttttcttctcgatgattcttctcaa 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)