BAC Information

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BAC

Clone NameMSMg01-513J02
Chromosome8 (Build37)
Map Location 90,854,400 - 91,006,665
singlet/doubletdoublet
Overlap geneBrd7, LOC100040369
Upstream geneCbln1, LOC100040294, 4933402J07Rik, Zfp423, LOC100040328, 5033428A16Rik, Heatr3, Papd5, Adcy7
Downstream geneNkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513J02.T7 (MSMg01no513_j02.b1)MSMg01-513J02.TJ (MSMg01no513_j02.g1)
ACCAG586258AG586259
length745746
length of high quality
(start - end)		540 (36 - 575)650 (66 - 715)
definitionCHROMAT_FILE: MSMg01no513_j02.b1 PHD_FILE: MSMg01no513_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:06 2005CHROMAT_FILE: MSMg01no513_j02.g1 PHD_FILE: MSMg01no513_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,854,400 - 90,854,924)(91,006,016 - 91,006,665)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGCC
AAGTACTCTATCAACAGACCTACACCACTCAGCCCTTAAACTGTAGAGAC
TAAAATCAGAATCTAAAAAAACTTACATAAACACACTTGAATTGATGTAT
TTTATTAGCATACCTGTCTACAAAAGGACCACCCTGTAATTTATGGAGAG
AAACAAGTTTTCTTTACTGTTCTTGCTTAATATTAATTTCAAATCAAGAA
AATAGGTATGCCTGTCTAGACGTCTTGCAGACAGGCTCTGTAAAAGGGTG
AGACATCTGTTTGCTAAACTAGGTTCTATCTATACTGACATACTTATTTT
AAAATCATGTGTGTTCATGTGGCTATGTGCACACAGTACCAGTGCTTGCA
GAGGCGGCCAGAGGTACGAGGTTCCCTGAATTGTAACTTATAGGTGGTTT
TGAGCAATGTGGGTGTGGAGAACTCAACTCCAGTCCTCTGCAAGCGCAGT
ATGTTCTCTTAACTGATGGGCTATCTCTCCTGCACTCTCATCCTCACCTT
TTTTTTTTTTTTTTGAGGCATGGTCTCATAGCCCAGCTGGACTCAAATTC
ATGGCAATCCTCCTCTCTCAGCCACTCAAATACTGGGATTATAAATGCAA
CCTACCATACCCAGCTTGCCTCTTATAGAGGTTATATTTGGAAAAACTAT
TATTTATCTCAATCCAGTGACTGAATGTGATATAAGGGTACATAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGAGTGTAGCAGCCGAGTCACGGCCAGCATTCCA
CTCCACTTCCCCACTTCCGCCGCTCACTCTTTCAAGACTTTTCAAAACAT
GTCTATTTTCCATCTGTCTATCCCTAGAGGTCGGAGAAAGGTCAGTCCCA
CATTCTCCTCAGAGTCTGGGCACAGAGTTCTACAAAGACAGCAGGTCCAC
ATGTGCCTACATGTGACTAACAGCCCTATCCCTGAATTCCTTACAACATC
CTGGGTTTAAACAGGAGAAACATTCACCAAAGAGCCATGGACACGTGACC
ATAAAGGCTCTACAGGGCACAAAGGATGCCTGCTTCTGGGGAATTAAAAA
ACATGCTAATCATTCTATCTGTAGATGTCCCACCACCCTGAGTAGCTCCC
CAGCTTTTTGAGGGCAATAAATAGAAGCAGAGTGACAGTTTTGAACATTG
TGACAGGTATCACAAGGCCTCCCCTGATACCTGGATCCTCTTTTTCTTCC
AGAACACAGAGACTCATTCTTTGTCTTAAGTACAGTCATGGGTTTGGCCT
GGGCCAGTTCTTTTCGAGCAGAAGCATTCTGAAGTGCTCTGGCAAGTTCG
TTGGTTGATTGTTCTAGAACCATAAAGCCAGAATCCAATCCTCTGGAACA
TTAGCTCTTATGCAGAANACCTGCCTGACATGCAGTAAATTTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_j02.b1 MSMg01no513_j02.b1 CHROMAT_FILE:
MSMg01no513_j02.b1 PHD_FILE: MSMg01no513_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:06 2005
         (540 letters)



>mm_chr8_90854196_90855135
          Length = 940

 Score = 1015 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctggccaagtactctatcaacagacctacaccactcagcccttaaactgtagaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggccaagtactctatcaacagacctacaccactcagcccttaaactgtagaga 264

                                                                       
Query: 65  ctaaaatcagaatctaaaaaaacttacataaacacacttgaattgatgtattttattagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaaaatcagaatctaaaaaaacttacataaacacacttgaattgatgtattttattagc 324

                                                                       
Query: 125 atacctgtctacaaaaggaccaccctgtaatttatggagagaaacaagttttctttactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atacctgtctacaaaaggaccaccctgtaatttatggagagaaacaagttttctttactg 384

                                                                       
Query: 185 ttcttgcttaatattaatttcaaatcaagaaaataggtatgcctgtctagacgtcttgca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcttgcttaatattaatttcaaatcaagaaaataggtatgcctgtctagacgtcttgca 444

                                                                       
Query: 245 gacaggctctgtaaaagggtgagacatctgtttgctaaactaggttctatctatactgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gacaggctctgtaaaagggtgagacatctgtttgctaaactaggttctatctatactgac 504

                                                                       
Query: 305 atacttattttaaaatcatgtgtgttcatgtggctatgtgcacacagtaccagtgcttgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atacttattttaaaatcatgtgtgttcatgtggctatgtgcacacagtaccagtgcttgc 564

                                                                       
Query: 365 agaggcggccagaggtacgaggttccctgaattgtaacttataggtggttttgagcaatg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaggcggccagaggtacgaggttccctgaattgtaacttataggtggttttgagcaatg 624

                                                                       
Query: 425 tgggtgtggagaactcaactccagtcctctgcaagcgcagtatgttctcttaactgatgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgggtgtggagaactcaactccagtcctctgcaagcgcagtatgttctcttaactgatgg 684

                                                        
Query: 485 gctatctctcctgcactctcatcctcacctttttttttttttttt 529
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctatctctcctgcactctcatcctcacctttttttttttttttt 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no513_j02.g1 MSMg01no513_j02.g1 CHROMAT_FILE:
MSMg01no513_j02.g1 PHD_FILE: MSMg01no513_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:06 2005
         (650 letters)



>mm_chr8_91005816_91006865
          Length = 1050

 Score = 1257 bits (650), Expect = 0.0
 Identities = 650/650 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagtgtagcagccgagtcacggccagcattccactccacttccccacttccgccgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 aagagtgtagcagccgagtcacggccagcattccactccacttccccacttccgccgctc 791

                                                                       
Query: 61  actctttcaagacttttcaaaacatgtctattttccatctgtctatccctagaggtcgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 actctttcaagacttttcaaaacatgtctattttccatctgtctatccctagaggtcgga 731

                                                                       
Query: 121 gaaaggtcagtcccacattctcctcagagtctgggcacagagttctacaaagacagcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gaaaggtcagtcccacattctcctcagagtctgggcacagagttctacaaagacagcagg 671

                                                                       
Query: 181 tccacatgtgcctacatgtgactaacagccctatccctgaattccttacaacatcctggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tccacatgtgcctacatgtgactaacagccctatccctgaattccttacaacatcctggg 611

                                                                       
Query: 241 tttaaacaggagaaacattcaccaaagagccatggacacgtgaccataaaggctctacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tttaaacaggagaaacattcaccaaagagccatggacacgtgaccataaaggctctacag 551

                                                                       
Query: 301 ggcacaaaggatgcctgcttctggggaattaaaaaacatgctaatcattctatctgtaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggcacaaaggatgcctgcttctggggaattaaaaaacatgctaatcattctatctgtaga 491

                                                                       
Query: 361 tgtcccaccaccctgagtagctccccagctttttgagggcaataaatagaagcagagtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgtcccaccaccctgagtagctccccagctttttgagggcaataaatagaagcagagtga 431

                                                                       
Query: 421 cagttttgaacattgtgacaggtatcacaaggcctcccctgatacctggatcctcttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cagttttgaacattgtgacaggtatcacaaggcctcccctgatacctggatcctcttttt 371

                                                                       
Query: 481 cttccagaacacagagactcattctttgtcttaagtacagtcatgggtttggcctgggcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cttccagaacacagagactcattctttgtcttaagtacagtcatgggtttggcctgggcc 311

                                                                       
Query: 541 agttcttttcgagcagaagcattctgaagtgctctggcaagttcgttggttgattgttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agttcttttcgagcagaagcattctgaagtgctctggcaagttcgttggttgattgttct 251

                                                             
Query: 601 agaaccataaagccagaatccaatcctctggaacattagctcttatgcag 650
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agaaccataaagccagaatccaatcctctggaacattagctcttatgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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