Query= MSMg01no513_l24.b1 MSMg01no513_l24.b1 CHROMAT_FILE:
MSMg01no513_l24.b1 PHD_FILE: MSMg01no513_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:21 2005
(616 letters)
>mm_chr8_67659284_67660299
Length = 1016
Score = 1102 bits (570), Expect = 0.0
Identities = 586/594 (98%), Gaps = 5/594 (0%)
Strand = Plus / Minus
Query: 28 tgtgggtgctgggattaaaggcatacaccaccacacccagtgtatgttctattttcttca 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 tgtgggtgctgggattaaaggcatacaccaccacacccagtgtatgttctattttcttca 957
Query: 88 tttaatcatttttggacatgatctcaagtagcccaggtcaaagactctaccatatgaagg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tttaatcatttttggacatgatctcaagtagcccaggtcaaagactctaccatatgaagg 897
Query: 148 gtgactttgaactcacgatcctcatgtcttctcctccctagtgctggtgtgcaccactca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gtgactttgaactcacgatcctcatgtcttctcctccctagtgctggtgtgcaccactca 837
Query: 208 gtctgttttatgcaatgctggaaattggagccaggtctttgtgcatgttgggcaagcatt 267
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 836 gtctgttttatgcaatgctgggaattggagccaggtctttgtgcatgtcgggcaagcatt 777
Query: 268 cgacctactgtgctgcaatcccagctcctgtaatggtaccttcatcccatggtttacaac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 776 cgacctactgtgctgcaatcccagctcctgtaatggtaccttcatcccatggttttcaac 717
Query: 328 agctttcacagtaacttgacacttaaccaagtctgtaaaagacacaaagccatgagtgag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agctttcacagtaacttgacacttaaccaagtctgtaaaagacacaaagccatgagtgag 657
Query: 388 atggttacagggacccaaaatgctggaaaaactaataaaaaatgaattggaagaaagaag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atggttacagggacccaaaatgctggaaaaactaataaaaaatgaattggaagaaagaag 597
Query: 448 aaccctacatttattttcaagtgaagttattgttcctggaaaagggaagagaggcctggg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaccctacatttattttcaagtgaagttattgttcctggaaaagggaagagaggcctggg 537
Query: 508 ttacttgcaacaggattttaaaggattgggaatgttaattttcttagttacttttcctat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttacttgcaacaggattttaaaggattgggaatgttaattttcttagttacttttcctat 477
Query: 568 tgctatgatt-----aaaaaaaaataccctgaccaaaagcaactcaccctggct 616
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tgctatgattaaaaaaaaaaaaaataccctgaccaaaagcaactcaccctggct 423
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_l24.g1 MSMg01no513_l24.g1 CHROMAT_FILE:
MSMg01no513_l24.g1 PHD_FILE: MSMg01no513_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:22 2005
(610 letters)
>mm_chr8_67480587_67481596
Length = 1010
Score = 1096 bits (567), Expect = 0.0
Identities = 596/607 (98%), Gaps = 4/607 (0%)
Strand = Plus / Plus
Query: 1 caggcttgctggtccacgaagactgcctccaaaggtagaaggagagaaaacactctgcat 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 caggcttgctggtccacgaagactgcctccaaaggtagaaggagagaatatactctgcat 260
Query: 61 atgttgtctggcatccacattcctgctgtagaaaagtgcacactcacaagcacaataaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttgtctggcatccacattcctgctgtagaaaagtgcacactcacaagcacaataaat 320
Query: 121 acataaataaagccaggcaaggtggcacaagcctttaattccaacacctggagggcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaataaagccaggcaaggtggcacaagcctttaattccaacacctggagggcagag 380
Query: 181 gcaggcagtctctgtgagttcaaggccagcctgagctacaaatcaagtttaggccaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggcagtctctgtgagttcaaggccagcctgagctacaaatcaagtttaggccaatta 440
Query: 241 agctttacagtgagaccctgtctcaaaaaaacaaaaaaaataaaacaaaaaaaaccaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 441 agctttacagtgagaccctgtctcaaaaaaacaaaaaaaataaaacaaaaaaa-ctaaaa 499
Query: 301 acattcctgtaatgtcagtaactagaggcagaggcaggaagatcaaaagttagaagtcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acattcctgtaatgtcagtaactagaggcagaggcaggaagatcaaaagttagaagtcag 559
Query: 361 ttgtgtcacatagtaataagaccttagccttttgccaaattcatgcagagattagcatat 420
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtgtcacatagtaa---gaccttagccttttgccaaattcatgcagagattagcataa 616
Query: 421 atacagatccatattaattttaattaattaatgtcatcatttagcactcttcttactttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atacagatccatattaattttaattaattaatgtcatcatttagcactcttcttactttt 676
Query: 481 ctaagctcctcattcatcacactccactagaaggtgcactgtgttccacaaggctggcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctaagctcctcattcatcacactccactagaaggtgcactgtgttccacaaggctggcac 736
Query: 541 cagaggactagtgtgcctggagagtacatttctagcatgccctgggtcttgctgacttgt 600
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct: 737 cagaggactagtgtgcctggagagtacatttctagcattctctgggtctggctgacttgt 796
Query: 601 ctgcatg 607
|||||||
Sbjct: 797 ctgcatg 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
