BAC Information

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BAC

Clone NameMSMg01-514C09
Chromosome8 (Build37)
Map Location 52,350,272 - 52,416,593
singlet/doubletdoublet
Overlap geneLOC667517
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC623872, LOC100040220, LOC623935
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514C09.T7 (MSMg01no514_c09.b1)MSMg01-514C09.TJ (MSMg01no514_c09.g1)
ACCAG586702AG586703
length733744
length of high quality
(start - end)		661 (73 - 733)665 (73 - 737)
definitionCHROMAT_FILE: MSMg01no514_c09.b1 PHD_FILE: MSMg01no514_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:56 2005CHROMAT_FILE: MSMg01no514_c09.g1 PHD_FILE: MSMg01no514_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,415,933 - 52,416,593)(52,350,272 - 52,350,936)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATT
CCAAGCTTCTTACAATGCAGGGATCAATCTTTGTTAATGCTCTCATCTTG
TGTTTTGTTAATTCACATTGGGAGGACTAAGAAAAAGGTACTATAATTCA
TCATATGTAGACCTCTTATCAGAAGTAATAGTGAGCATTTTCTGGGTTGA
TGGGAAATATTGTGAGGTGAAGCCAATAAGGAAAAGATACCTCAGACATG
TTAAAGGAATTTTGATAGGGAAACCATGGCTTTTATTACTTGTATGATAA
GAAAATAGACATGTTAAAAAAATATAACATTTTATAGTTAAAACCTAATA
AAATAGAGGAAGAACAGACAGAATGTGGTACATCACAGCTCAATGACTTA
AGGAATGTAGAACAGAGACAAATAACACTTTCCTACATACCGATGCATGT
AAATAAAACACCTGCTCCCTAGCTGAAGAATCAGGCAAGAATCTTGAAAA
TGCATGAGAGGGCTGCACTGAATGGCAGAGAGTGACTGGATGGAGAACAT
TCAGAAATGTTGAACATTAACTTTGGAAAGAAAGCAATAGACTCCTACTT
ACAGTGCCAAATGTCTTAGATGAATGACAGATAACTACTCCAGCTCTTAT
CCAGGGTAAAGCCTGTGTGGAACCAATTTTCAAAATTGTATTTTAGATGA
TATGTTTATGTAATTGGTGAAGCAAACTTTCAG

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGGAATATTTCACTTGAGCCCGAATAT
ACTATATGTAACTTGCCCTCATGTCTCATTAACTAAAGCAGATCATAGAG
GAACACTTTATTTCAACATGGTAGTTAAGAAGATTGCACAATGTGCCAGG
AGAAACTGAAAGACTACTAAAATGTCATTTAAATAATTACTACCTTAAAT
TACTTTTAAAATGTGGTACTATCTTAGCAAATTACTGCACACTAATATTC
AAGGTGAGGGAGTTGATACAATGAATACTAATAATTACAATTAATTTAGG
GGATGCCATTTAGCAATTTATGCCCTAAAATTTGTAAGGAACATTTTGAT
TATGTATGAAAGTTTCTTTCAGACTATGAGAACAGTTTAATATTTAAATG
TGGGTAAATGATGTTTAGAGATTTAGTCGCTAAGGTGGTCACTTCTTTGT
AACAGTGGCTATAAATATCATAGCGGTGCTGTACAGAAATTAAAAGCCCC
GCTTAAACAATTGCTCACCTCTCCAATTTATGCATTGCACATGCATCAGT
TCTCTGCTCATTTCAGTACTATATATTTGTTTGTTATGATAACCTACCTG
AAAGTCTCATGATACAAGCTAAATGACTGTGTACTCAGTAAGACAGTCAC
CTTATATGTTCAGTTATGTCGTATACCCAGCTGTGCCGATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_c09.b1 MSMg01no514_c09.b1 CHROMAT_FILE:
MSMg01no514_c09.b1 PHD_FILE: MSMg01no514_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:56 2005
         (661 letters)



>mm_chr8_52415733_52416793
          Length = 1061

 Score = 1232 bits (637), Expect = 0.0
 Identities = 655/661 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaatctttgttaatgctctcatcttgtgttttgttaattcacattgggaggactaaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 861 atcaatctttgttaatgctctcatcttgtgttttgttaattcacattgggaggattaaga 802

                                                                       
Query: 61  aaaaggtactataattcatcatatgtagacctcttatcagaagtaatagtgagcattttc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 801 aaaaggtactataattcatcatatgtagacctcttatcagaagtaatagtgagcatttcc 742

                                                                       
Query: 121 tgggttgatgggaaatattgtgaggtgaagccaataaggaaaagatacctcagacatgtt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgggctgatgggaaatattgtgaggtgaagccaataaggaaaagatacctcagacatgtt 682

                                                                       
Query: 181 aaaggaattttgatagggaaaccatggcttttattacttgtatgataagaaaatagacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggaattttgatagggaaaccatggcttttattacttgtatgataagaaaatagacat 622

                                                                       
Query: 241 gttaaaaaaatataacattttatagttaaaacctaataaaatagaggaagaacagacaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gttaaaaaaatataacattttatagttaaaacctaataaaatagaggaagaacaggcaga 562

                                                                       
Query: 301 atgtggtacatcacagctcaatgacttaaggaatgtagaacagagacaaataacactttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtggtacatcacagctcaatgacttaaggaatgtagaacagagacaaataacactttc 502

                                                                       
Query: 361 ctacataccgatgcatgtaaataaaacacctgctccctagctgaagaatcaggcaagaat 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacatactgatgcatgtaaataaaacacctgctccctagctgaagaatcaggcaagaat 442

                                                                       
Query: 421 cttgaaaatgcatgagagggctgcactgaatggcagagagtgactggatggagaacattc 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 cttgaaaatgcatgagagggctgcactgaattgcagagagtgactggatggagaacattc 382

                                                                       
Query: 481 agaaatgttgaacattaactttggaaagaaagcaatagactcctacttacagtgccaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaatgttgaacattaactttggaaagaaagcaatagactcctacttacagtgccaaat 322

                                                                       
Query: 541 gtcttagatgaatgacagataactactccagctcttatccagggtaaagcctgtgtggaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcttagatgaatgacagataactactccagctcttatccagggtaaagcctgtgtggaa 262

                                                                       
Query: 601 ccaattttcaaaattgtattttagatgatatgtttatgtaattggtgaagcaaactttca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaattttcaaaattgtattttagatgatatgtttatgtaattggtgaagcaaactttca 202

            
Query: 661 g 661
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_c09.g1 MSMg01no514_c09.g1 CHROMAT_FILE:
MSMg01no514_c09.g1 PHD_FILE: MSMg01no514_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:56 2005
         (665 letters)



>mm_chr8_52350072_52351136
          Length = 1065

 Score = 1270 bits (657), Expect = 0.0
 Identities = 663/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggaatatttcacttgagcccgaatatactatatgtaacttgccctcatgtctcattaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggaatatttcacctgagcccgaatatactatatgtaacttgccctcatgtctcattaa 260

                                                                       
Query: 61  ctaaagcagatcatagaggaacactttatttcaacatggtagttaagaagattgcacaat 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaagcagatcatagaggaatactttatttcaacatggtagttaagaagattgcacaat 320

                                                                       
Query: 121 gtgccaggagaaactgaaagactactaaaatgtcatttaaataattactaccttaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgccaggagaaactgaaagactactaaaatgtcatttaaataattactaccttaaatta 380

                                                                       
Query: 181 cttttaaaatgtggtactatcttagcaaattactgcacactaatattcaaggtgagggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttaaaatgtggtactatcttagcaaattactgcacactaatattcaaggtgagggag 440

                                                                       
Query: 241 ttgatacaatgaatactaataattacaattaatttaggggatgccatttagcaatttatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgatacaatgaatactaataattacaattaatttaggggatgccatttagcaatttatg 500

                                                                       
Query: 301 ccctaaaatttgtaaggaacattttgattatgtatgaaagtttctttcagactatgagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctaaaatttgtaaggaacattttgattatgtatgaaagtttctttcagactatgagaa 560

                                                                       
Query: 361 cagtttaatatttaaatgtgggtaaatgatgtttagagatttagtcgctaaggtggtcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtttaatatttaaatgtgggtaaatgatgtttagagatttagtcgctaaggtggtcac 620

                                                                       
Query: 421 ttctttgtaacagtggctataaatatcatagcggtgctgtacagaaattaaaagccccgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctttgtaacagtggctataaatatcatagcggtgctgtacagaaattaaaagccccgc 680

                                                                       
Query: 481 ttaaacaattgctcacctctccaatttatgcattgcacatgcatcagttctctgctcatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaacaattgctcacctctccaatttatgcattgcacatgcatcagttctctgctcatt 740

                                                                       
Query: 541 tcagtactatatatttgtttgttatgataacctacctgaaagtctcatgatacaagctaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagtactatatatttgtttgttatgataacctacctgaaagtctcatgatacaagctaa 800

                                                                       
Query: 601 atgactgtgtactcagtaagacagtcaccttatatgttcagttatgtcgtatacccagct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgactgtgtactcagtaagacagtcaccttatatgttcagttatgtcgtatacccagct 860

                
Query: 661 gtgcc 665
           |||||
Sbjct: 861 gtgcc 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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