BAC Information

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BAC

Clone NameMSMg01-514C13
Chromosome8 (Build37)
Map Location 41,627,548 - 41,749,917
singlet/doubletdoublet
Overlap geneVps37a, Mtmr7, LOC100039179
Upstream geneMsr1, EG621431, LOC100039072, LOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7
Downstream geneAdam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-514C13.T7 (MSMg01no514_c13.b1)MSMg01-514C13.TJ (MSMg01no514_c13.g1)
ACCAG586710AG586711
length739745
length of high quality
(start - end)		676 (64 - 739)675 (67 - 741)
definitionCHROMAT_FILE: MSMg01no514_c13.b1 PHD_FILE: MSMg01no514_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:56 2005CHROMAT_FILE: MSMg01no514_c13.g1 PHD_FILE: MSMg01no514_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,749,428 - 41,749,917)(41,627,548 - 41,628,222)
sequence
XXXXXXXXXXXXXXXXXXXXXXXATATTCAGACAATGCGCGGAATTCTTA
ATTTTTCCAATATTATTTCTTTGCACTTTTGTATATTTCTATTTTCTACG
TGGTTGATCTGATCATCTACAAATATGGATAATTTTCTTTCTCTGTATGC
TTTTGGTGTTAATTCCTTGTCTTATTATCATGGTTTTGACTTCTGGTGTA
ATGCTGACTTAGAGCAGTGACAGCGTATATCTTTGTTTCCCATCTTAGAC
CGAAAGCAGTCTTTAACCATCAAGTATGATGTTAGCTATAAGAGCGTTTT
AGATATTCTTGTGAAGGTGACAGAAATATTCTTTATTGCTCTTGAACTGA
GCATTTCTTGTGAATCATGAATTGGTATTGGATTCTGTCAGATAATTTTT
TTGTGGGGCCAGGAGGGTCAGTTGACAAAACATATAGTTTCTTTTCTTTT
TTGAAATTCTTTTTGTTTCGAGATTTTGATTATAACATTTATAATCTTTT
GTCATTGTTGTTCTTAGGTGTATTGTCTTTGAGACTCTTCGAGTTCATTT
CTCAGAAAGATGGGTAGAAATGCAAACAAAATTGCACTTGGTTGTAAGTA
GAAAAAAAAAAAACTTCCCATGCTAATCTATTCCTCCTTTCAGACATGGT
AAAGCAATCAGACCAATGTGGCCAATAGTCTCTTAGCACCCCAGTCCTGG
ACTCATGTCCACTAGCTTCACCAGGGTCTCCAGCCTTTA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTGTAGGGGCTGAGCGGTAGAGCATGTGCCAAA
CATTTGTAAGGCCTCAGCTGCACCTGACACAACACAGGTCAGCTTTACCA
CTTTTTCTCACCCCTGGACATGTATGTAAGAATTACTTGAGGTGATTCTA
GAAATACTTAAAAATTGTCCTGAGGTAGTGGCGCACACCTTCACCCACAT
ACTTGGAAGGCAGAGGTAGGCTGATCTCCGTGAATTTGAGGCTAGCCTTG
TCTACAGAGTGAGTTCCAGGATGGCCAGAGCTACAGAGGGAAACCTGTCT
CAAAACAAAAACAAAAAACAGAAAACCCATAGATATGTTTGTGGATTAAC
TTCTGACATTACTAGGAGACGGAAGTCTCACAGGAAATTCCCTGATCCTT
TGCTTCTTATAATCTTTCTAAATTTCCTTGAATCTTAGCTACAGGAGTTG
TTTTGTATCTGTTTGGACTGGGTTCTACAACTCTGTACTTGATTAGTTGT
GGTCTTCTATAATGGTCTTTCTGGTATATTGCAAAGAGACGTGTTCCTTA
TGGAGGCGAGGACTGCACTTACCTGTGGATTAAGGGTTATGCTGGATTGG
TAATGTGGTGGTTGTAGGTTCTTTAAGATCCACAACTTCACTAGTCCCGG
CTAGTTAGTTGGCTAGGTTCCCAGTTACAGGCATGAATTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no514_c13.b1 MSMg01no514_c13.b1 CHROMAT_FILE:
MSMg01no514_c13.b1 PHD_FILE: MSMg01no514_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:56 2005
         (676 letters)



>mm_chr8_41748842_41749917
          Length = 1076

 Score =  948 bits (490), Expect = 0.0
 Identities = 490/490 (100%)
 Strand = Plus / Minus

                                                                        
Query: 187  ccgaaagcagtctttaaccatcaagtatgatgttagctataagagcgttttagatattct 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ccgaaagcagtctttaaccatcaagtatgatgttagctataagagcgttttagatattct 1017

                                                                        
Query: 247  tgtgaaggtgacagaaatattctttattgctcttgaactgagcatttcttgtgaatcatg 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 tgtgaaggtgacagaaatattctttattgctcttgaactgagcatttcttgtgaatcatg 957

                                                                        
Query: 307  aattggtattggattctgtcagataatttttttgtggggccaggagggtcagttgacaaa 366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  aattggtattggattctgtcagataatttttttgtggggccaggagggtcagttgacaaa 897

                                                                        
Query: 367  acatatagtttcttttcttttttgaaattctttttgtttcgagattttgattataacatt 426
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  acatatagtttcttttcttttttgaaattctttttgtttcgagattttgattataacatt 837

                                                                        
Query: 427  tataatcttttgtcattgttgttcttaggtgtattgtctttgagactcttcgagttcatt 486
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  tataatcttttgtcattgttgttcttaggtgtattgtctttgagactcttcgagttcatt 777

                                                                        
Query: 487  tctcagaaagatgggtagaaatgcaaacaaaattgcacttggttgtaagtagaaaaaaaa 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  tctcagaaagatgggtagaaatgcaaacaaaattgcacttggttgtaagtagaaaaaaaa 717

                                                                        
Query: 547  aaaacttcccatgctaatctattcctcctttcagacatggtaaagcaatcagaccaatgt 606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  aaaacttcccatgctaatctattcctcctttcagacatggtaaagcaatcagaccaatgt 657

                                                                        
Query: 607  ggccaatagtctcttagcaccccagtcctggactcatgtccactagcttcaccagggtct 666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  ggccaatagtctcttagcaccccagtcctggactcatgtccactagcttcaccagggtct 597

                      
Query: 667  ccagccttta 676
            ||||||||||
Sbjct: 596  ccagccttta 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no514_c13.g1 MSMg01no514_c13.g1 CHROMAT_FILE:
MSMg01no514_c13.g1 PHD_FILE: MSMg01no514_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:57 2005
         (675 letters)



>mm_chr8_41627348_41628422
          Length = 1075

 Score = 1305 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtaggggctgagcggtagagcatgtgccaaacatttgtaaggcctcagctgcacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtaggggctgagcggtagagcatgtgccaaacatttgtaaggcctcagctgcacctg 260

                                                                       
Query: 61  acacaacacaggtcagctttaccactttttctcacccctggacatgtatgtaagaattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaacacaggtcagctttaccactttttctcacccctggacatgtatgtaagaattac 320

                                                                       
Query: 121 ttgaggtgattctagaaatacttaaaaattgtcctgaggtagtggcgcacaccttcaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaggtgattctagaaatacttaaaaattgtcctgaggtagtggcgcacaccttcaccc 380

                                                                       
Query: 181 acatacttggaaggcagaggtaggctgatctccgtgaatttgaggctagccttgtctaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatacttggaaggcagaggtaggctgatctccgtgaatttgaggctagccttgtctaca 440

                                                                       
Query: 241 gagtgagttccaggatggccagagctacagagggaaacctgtctcaaaacaaaaacaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgagttccaggatggccagagctacagagggaaacctgtctcaaaacaaaaacaaaa 500

                                                                       
Query: 301 aacagaaaacccatagatatgtttgtggattaacttctgacattactaggagacggaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagaaaacccatagatatgtttgtggattaacttctgacattactaggagacggaagt 560

                                                                       
Query: 361 ctcacaggaaattccctgatcctttgcttcttataatctttctaaatttccttgaatctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcacaggaaattccctgatcctttgcttcttataatctttctaaatttccttgaatctt 620

                                                                       
Query: 421 agctacaggagttgttttgtatctgtttggactgggttctacaactctgtacttgattag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctacaggagttgttttgtatctgtttggactgggttctacaactctgtacttgattag 680

                                                                       
Query: 481 ttgtggtcttctataatggtctttctggtatattgcaaagagacgtgttccttatggagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgtggtcttctataatggtctttctggtatattgcaaagagacgtgttccttatggagg 740

                                                                       
Query: 541 cgaggactgcacttacctgtggattaagggttatgctggattggtaatgtggtggttgta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgaggactgcacttacctgtggattaagggttatgctggattggtaatgtggtggttgta 800

                                                                       
Query: 601 ggttctttaagatccacaacttcactagtcccggctagttagttggctaggttcccagtt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggttctttaagatccacaacttcactagtcccggctagttagttggctaggttcccagtt 860

                          
Query: 661 acaggcatgaattcc 675
           |||||||||||||||
Sbjct: 861 acaggcatgaattcc 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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