BAC Information

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BAC

Clone NameMSMg01-515F06
Chromosome8 (Build37)
Map Location 105,980,429 - 105,981,133
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515F06.T7 (MSMg01no515_f06.b1)MSMg01-515F06.TJ (MSMg01no515_f06.g1)
ACCAG587593AG587594
length784789
length of high quality
(start - end)		675 (42 - 716)194 (74 - 267)
definitionCHROMAT_FILE: MSMg01no515_f06.b1 PHD_FILE: MSMg01no515_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:36 2005CHROMAT_FILE: MSMg01no515_f06.g1 PHD_FILE: MSMg01no515_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGGCTTGTAGTGATCCCAGGGCCTTTCTAGGGTACACGCTAAAGTTCT
CTGTATCTTTTTCTTCTTATGAAGGCTTTCATCCTATAGCAAGGGTGCTA
TCCTTAGGATGCTATCAAAATCTAACTGGAACATTTGCAACATGCAACGA
TCCCATTTGGAATCTGTAGAAGAGAAACAGTTGTCCCCATAGAGTTCCAG
CTGCTGTGAATGCATCCTATTCTTGCTGCCTTCCTGCTCTCTCTCACAGG
ATCCATTCCTCCTGCCTAGGATAGCCTCTTTTACCAATCACTCCCTATTT
ACCCATCTTAGTTTTTCTGGTCCTTCAAGGTACAGAAATAGTTATCCGGA
GCAGGCCATGTATCTCCATTTAATCAGTTACCACATTGTCCCGGTTCCCC
CTTCCCCTTGCACTTGGCTGGGACACAGACTGCATTTTCCACCTTATTTT
ATCCCTCATCTAGCAGTAGAGCATACTATGTGCTCCATGGGTAGCTGAAT
GATGAATAAAAGGTACAGAAGGAGGAGACAGAATGGATACACCACTTCAA
CTCCCAGTCTATAACACAGACACATATCAACAGAGAATACCAGGACTTAA
TCCAAATAGTGAAAACATTGCTCACAAATGTTCAAATGAAAATTCCTACC
ATAGTAGCTTGAGGGGTCAAACCAAGGAAAAGGAGTTCAGATGGCCATCA
GCAGAACAGGCACTCAGAAAGCTGGTTGTGCTGC

AATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTTCAAACCACTAAGTCAACCTCAAA
TGGTATTCATTGCTGAGGATTACAGGGCTAACCAGGAAATGGAGAGCAAT
AGCAAGACTATGCCAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCCCTCC
CTCCCTCCCTCTCTCTCAAGTGCTCGGAGTGTCTGGAACTTTTGTTCTCC
TCTTTGACTCCATTGTTGAACACAAAGAGAGGCGGAGTGAGAATGTCTTG
GAGAGGGAAAGTTGGCTGACTCAAAACTTCATTCTCCCTCGCAGTACCCA
ACCATTCAGAGTGGGAGAGAGAGTGGCTTGCTTGCCAAAGGGCTCTGTGT
GACAGAGCTAAACTAGAAGAATATGAAAAGTTCAAGATGAAAAGACAGCC
CTCACTGCTGAAAGCAGAGGTGGGAACTCACAGAGCTTGGGAAAAGAGGT
TTCACAAAGAAAAGAGCTTATTTGCAAACTCGTTTCTCTGCAGCAAATGG
TCAAAGGACCTCTGGGAGGGGGAAATCCGGGACACAAGCCTTTGGATTGA
GGTGGTAGAGATCTGCGAATAATTGCCGCTCTTCAGGATCCCTTCGGCAG
ACAAACGGTGGGAAGGGCCGTAAAAGGCTGGGGGAGAAAGTCTGGCAAAT
TTTAAGCACCGAAATTCGACAAAAGGGGGGAAGAAAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_f06.b1 MSMg01no515_f06.b1 CHROMAT_FILE:
MSMg01no515_f06.b1 PHD_FILE: MSMg01no515_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:36 2005
         (675 letters)



>mm_chr8_105980059_105981133
          Length = 1075

 Score = 1162 bits (601), Expect = 0.0
 Identities = 659/705 (93%), Gaps = 41/705 (5%)
 Strand = Plus / Minus

                                                                        
Query: 12   tggcttgtagtgatcccagggcctttctagggtacacgctaaagttctctgtatcttttt 71
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1075 tggcttgtagtgatcccagggcctttctaggatacacgctaaagttctctgtatcttttt 1016

                                                                        
Query: 72   cttcttatgaaggctttcatcctatagcaagggtgctatccttaggatgctatcaaaatc 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 cttcttatgaaggctttcatcctatagcaagggtgctatccttaggatgctatcaaaatc 956

                                                                        
Query: 132  taactggaacatttgcaacatgcaacgatcccatttgga--------------------- 170
            |||||||||||||||||||||||||||||||||||||||                     
Sbjct: 955  taactggaacatttgcaacatgcaacgatcccatttggaatcattgcaagaaaccaacta 896

                                                                        
Query: 171  --------------------atctgtagaagagaaacagttgtccccatagagttccagc 210
                                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  accttgatgagactgatcacatctgtagaagagaaacagttgtccccatagagttccagc 836

                                                                        
Query: 211  tgctgtgaatgcatcctattcttgctgccttcctgctctctctcacaggatccattcctc 270
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  tgctgtgaatgcatcctattcttgctgccttcctgctctctctcacaggatccattcctc 776

                                                                        
Query: 271  ctgcctaggatagcctcttttaccaatcactccctatttacccatcttagtttttctggt 330
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  ctgcctgggatagcctcttttaccaatcactccctatttacccatcttagtttttctggt 716

                                                                        
Query: 331  ccttcaaggtacagaaatagttatccggagcaggccatgtatctccatttaatcagttac 390
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 715  ccttcaaggtacagaaatagttatccagagcaggccatttatctccatttaatcagttac 656

                                                                        
Query: 391  cacattgtcccggttcccccttccccttgcacttggctgggacacagactgcattttcca 450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  cacattgtcccggttcccccttccccttgcacttggctgggacacagactgcattttcca 596

                                                                        
Query: 451  ccttattttatccctcatctagcagtagagcatactatgtgctccatgggtagctgaatg 510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  ccttattttatccctcatctagcagtagagcatactatgtgctccatgggtagctgaatg 536

                                                                        
Query: 511  atgaataaaaggtacagaaggaggagacagaatggatacaccacttcaactcccagtcta 570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535  atgaataaaaggtacagaaggaggagacagaatggatacaccacttcaactcccagtcta 476

                                                                        
Query: 571  taacacagacacatatcaacagagaataccaggacttaatccaaatagtgaaaacattgc 630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475  taacacagacacatatcaacagagaataccaggacttaatccaaatagtgaaaacattgc 416

                                                         
Query: 631  tcacaaatgttcaaatgaaaattcctaccatagtagcttgagggg 675
            |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 415  tcacaaatgttcaaatgaaaattcctaccacagtagcttgagggg 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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