Query= MSMg01no515_m16.b1 MSMg01no515_m16.b1 CHROMAT_FILE:
MSMg01no515_m16.b1 PHD_FILE: MSMg01no515_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:15 2005
(608 letters)
>mm_chr8_90096205_90097212
Length = 1008
Score = 969 bits (501), Expect = 0.0
Identities = 579/609 (95%), Gaps = 13/609 (2%)
Strand = Plus / Plus
Query: 5 ggaattcactttgatataccctgtcttgaaaaaccc-aaaaaagaaaggaa----ggaag 59
|||||||||| ||| | ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 202 ggaattcactctgagaaaccctgtcttgaaaaacccaaaaaaagaaaggaaggagggaag 261
Query: 60 gagggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaagaag 119
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 262 gagggaaggagggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag----gaag 317
Query: 120 gaaggaaggaaagaaaggaaggaaggaaggaaggaaggaaggaaggaagaaaga-a-aga 177
|||||||||||||||| |||| ||| ||| ||||||| ||| ||| |||||||| | |||
Sbjct: 318 gaaggaaggaaagaaa-gaagaaagaaagaaaggaagaaagaaagaaagaaagagagaga 376
Query: 178 aaga-aaaaagagagaaagaaagaaagaaaagaaatggaagagacaagcaaacatgatgg 236
||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gagagagaaagagagagagaaagaaagaaaagaaatggaagagacaagcaaacatgatgg 436
Query: 237 cacatgcctgtagtaccagcactcagggcctgaacatgcagagtcacaattctaggccag 296
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 437 cacatgcctgtagtaccagcactcaggggctgaacatgcagagtcacaattcaaggccag 496
Query: 297 cctagcctacatgagaccctgattcagagaaaagggggtggaggcagtcaggattttttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cctagcctacatgagaccctgattcagagaaaagggggtggaggcagtcaggattttttt 556
Query: 357 tccgaccaggcaaaattggagggagttcatctgtactacaactagagagtgtctttgaac 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 557 tccgaccaggcaaaattggagggagttcatctgtactacaactagagagtgtctttcaac 616
Query: 417 agaactgagagaatatgtattagcaacatacaaactaatgaatgtaacactctccctggt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agaactgagagaatatgtattagcaacatacaaactaatgaatgtaacactctccctggt 676
Query: 477 aacagtaagtatagtcaaattcagaattctgtggcattgtaatgcttgtaatgtaatatg 536
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aacagtaactatagtcaaattcagaattctgtggcattgtaatgcttgtaatgtaatatg 736
Query: 537 atggttctatataaatcatatccaaaagtaaacacatcttttagatttaattttgcacac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atggttctatataaatcatatccaaaagtaaacacatcttttagatttaattttgcacac 796
Query: 597 ttatgtggt 605
|||||||||
Sbjct: 797 ttatgtggt 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no515_m16.g1 MSMg01no515_m16.g1 CHROMAT_FILE:
MSMg01no515_m16.g1 PHD_FILE: MSMg01no515_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:15 2005
(684 letters)
>mm_chr8_90243584_90244667
Length = 1084
Score = 1276 bits (660), Expect = 0.0
Identities = 679/686 (98%), Gaps = 2/686 (0%)
Strand = Plus / Minus
Query: 1 acttagatccttggttctagcactgccttctatgtaaagagaagctatgaactagggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 867 acttagatccttggttctagcactgccttctatgtaaagagaagctatgaattagggacg 808
Query: 61 acacgcatacatgagtgatgcagacatgtactctttggtacaatagtgtgtgtgtg--tg 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 807 acacgcatacatgagtgatgcagacatgtactctttggtacaatagtgtgtgtgtgtatg 748
Query: 119 tgtatatacatatacatatatgaatagggtgtgtgtgcacgcatctgtgtatctctctgc 178
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tatatatacatatacatatatgaatagggtgtgtgtgcacgcatctgtgtatctctctgc 688
Query: 179 atgtctgtacacacatacacacgatgatatgtatggtattgtgtcagtgatacacagtga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 atgtctgtacacacatacacacgatgatatgtatggtattgtgtcagtgatacacagtga 628
Query: 239 tgaagccagcaaatatttaatggctacttgtctgagaaacatgaattatgatgtatagtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgaagccagcaaatatttaatggctacttgtctgagaaacatgaattatgatgtatagtt 568
Query: 299 tttgtcaattttggtaatgtacatgctcccacttcctcccaacacttccctttagtcttt 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tttgtcaattttggtaatgcacatgctcccacttcctcccaacacttccctttagtcttt 508
Query: 359 gaaagtggagatcctcggtctgaaactagggccaggacactgaattcggtgtgaggagga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaagtggagatcctcggtctgaaactagggccaggacactgaattcggtgtgaggagga 448
Query: 419 aggaggagctggctcaaggacatcagtgttttctacacacactcaggcatacacacacat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aggaggagctggctcaaggacatcagtgttttctacacacactcaggcatacacacacat 388
Query: 479 gcatgcacacacgggcacatgctgcacataagccctttgcattcatgtgcacacacaagc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcatgcacacacgggcacatgctgcacataagccctttgcattcatgtgcacacacaagc 328
Query: 539 gtacatacatctgcacctaaacatatacctaagctatagtttacgaaagagaaataagaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtacatacatctgcacctaaacatatacctaagctatagtttacgaaagagaaataagaa 268
Query: 599 aacaaacgctttgccctgaatgtcacccgtgtattttccccaagtgtcagctttctttgg 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 267 aacaaacgctttgccctgaatgtcacccgtgtattttccccaagtgtcagctttttttgg 208
Query: 659 tgaatttgctcatctgttttattcaa 684
||||||||||||||||||||||||||
Sbjct: 207 tgaatttgctcatctgttttattcaa 182
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
