BAC Information

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BAC

Clone NameMSMg01-516E21
Chromosome8 (Build37)
Map Location 40,689,222 - 40,850,081
singlet/doubletdoublet
Overlap geneMsr1, EG621431, LOC100039072
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304
Downstream geneLOC666959, EG632166, Fgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516E21.T7 (MSMg01no516_e21.b1)MSMg01-516E21.TJ (MSMg01no516_e21.g1)
ACCAG588334AG588335
length763778
length of high quality
(start - end)		692 (52 - 743)625 (82 - 706)
definitionCHROMAT_FILE: MSMg01no516_e21.b1 PHD_FILE: MSMg01no516_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:58 2005CHROMAT_FILE: MSMg01no516_e21.g1 PHD_FILE: MSMg01no516_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,689,222 - 40,689,909)(40,849,751 - 40,850,081)
sequence
NNNNAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAGAATTTGTATGCCAGCACAGCTGGGATTGGGGTCAT
TCTGTATGAAGCCAAAATTTTCCACAGCAATGCATCTGGCACAAGAAAAG
AGTCACCCACACTCCACAGCACAGGCCAATTAAGCCACAGGTACAAATCC
AGGTTTCTCTAGATGTTTTCACAGAATAACTAGTCCATTCATACTACAGA
CTCCCAAAATCATTGGCTAATTCCATCTTTCTTTTCCTCGGAGACACATT
TCATCAGACCTTGGAGGCACAAAGGCAGAGACAAAACCTTGTACCAGTAA
CAATGCAAATTTGTTGCTGTCCTTCTTAGAACATGCTCGACAGAAATGGG
CTCAGGTTCTGTCCTGCATAGCCCAAGCTTGTTTTATTAGTTTGACATTT
GGCCTCTGGTTTAGCTGCTTCTCTTCCTTACACAATCTTCTTCTTTGCTG
AGACAAACTCACTGACTTATGTTCTGGGCACACGTGCATTGTTCCATATA
ACATAGAAATCTTGTCTTATTTAAAAATTTTTTAAATTTAAATTAAATAC
ATATGGCTCTTGGCATTTTTATATTCTTTCAGTCCTGATATGATTAGAGA
TTTACCAGGTCTGCATAAAATTTACAATGAACAGCTGTTCTGTTAAAAAA
AAATAAAAAGACTGCTATGAACTATTCTTAAGACTTTAAAGGTCTTCATG
GTTTTACAGACAN

NNNNCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTTATGTATTTTTAT
ATTTATTTCCACTTTGGAGTCAGGGTAAAGAAAAAATTTATTAAAAAACA
AACAAACATAAAGCTACTTTTGTGTTTGAAAGCCTACTGAGTTCACAGTG
CTGAATGGATTCTTTTTTCCCAACATATATTTTTTATCCATTATTTGAGA
ATTTCACACAGTGCACATAGATCAAAATTGATTCTCATTCTTCCAAGGTC
TACCCTCCCACCTTTTACCTCAACCCCCTATTATAAAAAAAGTACAATTT
GTATTGCATATATACTCATTTGAGCATGGTCAATTTCATAGTACCCATCC
ACTTAAAGGTAACTATATAAATGACTCCTTTCCCACCACCCCTGCAAGAA
GCTACAGTTCATCATCTTTATCATAAATTTTAAGGACTACCTTCAATGCC
TTCCCATGTAGACTGTTTACATTTTGCTTTTACAAAGGGCAGGAATGGGG
ATTGCAGGTAAGGGGATTGTTGCAGAAGCCTTCATTGTCTCTAATCCCCA
ACCATAACTCTAGATCCATCAAACCACTGCAATAGAAGTTTGTCTGCCAA
TAACAGCCAGCAGCATCACAAAGCATCAATTTCCACATGATTTTCCATGA
CTGGAAGTGCCACAGACATCCACAAGTTCTCCAGCAGCAGTACAGACCAC
AGCTATCATGGGCTCTGGCAGCAGCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_e21.b1 MSMg01no516_e21.b1 CHROMAT_FILE:
MSMg01no516_e21.b1 PHD_FILE: MSMg01no516_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:58 2005
         (692 letters)



>mm_chr8_40689018_40690109
          Length = 1092

 Score = 1323 bits (684), Expect = 0.0
 Identities = 687/688 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagaatttgtatgccagcacagctgggattggggtcattctgtatgaagccaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagaattcgtatgccagcacagctgggattggggtcattctgtatgaagccaa 264

                                                                       
Query: 65  aattttccacagcaatgcatctggcacaagaaaagagtcacccacactccacagcacagg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattttccacagcaatgcatctggcacaagaaaagagtcacccacactccacagcacagg 324

                                                                       
Query: 125 ccaattaagccacaggtacaaatccaggtttctctagatgttttcacagaataactagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaattaagccacaggtacaaatccaggtttctctagatgttttcacagaataactagtc 384

                                                                       
Query: 185 cattcatactacagactcccaaaatcattggctaattccatctttcttttcctcggagac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattcatactacagactcccaaaatcattggctaattccatctttcttttcctcggagac 444

                                                                       
Query: 245 acatttcatcagaccttggaggcacaaaggcagagacaaaaccttgtaccagtaacaatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatttcatcagaccttggaggcacaaaggcagagacaaaaccttgtaccagtaacaatg 504

                                                                       
Query: 305 caaatttgttgctgtccttcttagaacatgctcgacagaaatgggctcaggttctgtcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaatttgttgctgtccttcttagaacatgctcgacagaaatgggctcaggttctgtcct 564

                                                                       
Query: 365 gcatagcccaagcttgttttattagtttgacatttggcctctggtttagctgcttctctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatagcccaagcttgttttattagtttgacatttggcctctggtttagctgcttctctt 624

                                                                       
Query: 425 ccttacacaatcttcttctttgctgagacaaactcactgacttatgttctgggcacacgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttacacaatcttcttctttgctgagacaaactcactgacttatgttctgggcacacgt 684

                                                                       
Query: 485 gcattgttccatataacatagaaatcttgtcttatttaaaaattttttaaatttaaatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcattgttccatataacatagaaatcttgtcttatttaaaaattttttaaatttaaatta 744

                                                                       
Query: 545 aatacatatggctcttggcatttttatattctttcagtcctgatatgattagagatttac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aatacatatggctcttggcatttttatattctttcagtcctgatatgattagagatttac 804

                                                                       
Query: 605 caggtctgcataaaatttacaatgaacagctgttctgttaaaaaaaaataaaaagactgc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caggtctgcataaaatttacaatgaacagctgttctgttaaaaaaaaataaaaagactgc 864

                                       
Query: 665 tatgaactattcttaagactttaaaggt 692
           ||||||||||||||||||||||||||||
Sbjct: 865 tatgaactattcttaagactttaaaggt 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_e21.g1 MSMg01no516_e21.g1 CHROMAT_FILE:
MSMg01no516_e21.g1 PHD_FILE: MSMg01no516_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:58 2005
         (625 letters)



>mm_chr8_40849751_40850775
          Length = 1025

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttatgtatttttatatttatttccactttggagtcagggtaaagaaaaaatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 attctttatgtatttttatatttatttccactttggagtcagggtaaagaaaaaatttat 272

                                                                       
Query: 61  taaaaaacaaacaaacataaagctacttttgtgtttgaaagcctactgagttcacagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 taaaaaacaaacaaacataaagctacttttgtgtttgaaagcctactgagttcacagtgc 212

                                                                       
Query: 121 tgaatggattcttttttcccaacatatattttttatccattatttgagaatttcacacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tgaatggattcttttttcccaacatatattttttatccattatttgagaatttcacacag 152

                                                                       
Query: 181 tgcacatagatcaaaattgattctcattcttccaaggtctaccctcccaccttttacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tgcacatagatcaaaattgattctcattcttccaaggtctaccctcccaccttttacctc 92

                                                                       
Query: 241 aaccccctattataaaaaaagtacaatttgtattgcatatatactcatttgagcatggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  aaccccctattataaaaaaagtacaatttgtattgcatatatactcatttgagcatggtc 32

                                          
Query: 301 aatttcatagtacccatccacttaaaggtaa 331
           |||||||||||||||||||||||||||||||
Sbjct: 31  aatttcatagtacccatccacttaaaggtaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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