BAC Information

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BAC

Clone NameMSMg01-516F16
Chromosome8 (Build37)
Map Location 122,681,153 - 122,853,773
singlet/doubletdoublet
Overlap gene6430548M08Rik, 1700120B06Rik
Upstream geneCdh13, Hsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7
Downstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516F16.T7 (MSMg01no516_f16.b1)MSMg01-516F16.TJ (MSMg01no516_f16.g1)
ACCAG588370AG588371
length737741
length of high quality
(start - end)
373 (190 - 562)567 (79 - 645)
definitionCHROMAT_FILE: MSMg01no516_f16.b1 PHD_FILE: MSMg01no516_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:03 2005CHROMAT_FILE: MSMg01no516_f16.g1 PHD_FILE: MSMg01no516_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,853,401 - 122,853,773)(122,681,153 - 122,681,719)
sequence
NNNNAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCGATTTGCCAAATGTGCGGGCAGCTGCACCAGGCTCCA
AGCCTCCATAGGGCCCAAGGGGAAAGATGTGTCACTTGGAGGCCTGGGGT
CCCCAGAGTCAAGTACTGCCTGGCAGGTTAAGTCACAGGTGTCTCAGGAG
CCTGTCCCTCTGTGACACAGTGACCAGGCCCATGGACCACTCAGCCCAGC
ACAACCAACCACCTCACCATCCTGACCCCACCCCAGCGCCTGTCATATGT
GTTTCCCAAGTAAAACTTCCCCTCCCCAGATGTGCCCATCCTGGGAGCCT
GGCATCCATCACAGGGGTGGAGATGGTCTGGTGGGCAGCGAGCACCGGCC
CTGGCCTGGGAAGCAGAGACTCATCACACAATGTCTTGAAAGTTTATATG
GAGCATCTTATGCTTACCAGCACCATACCCAGTGTTGCTATAGCAACGTC
TCAGCTCAGTGCTACATAATGCTGTTGGATGTTGTAACGGGGTGCCAGGG
AGGGGTAGGTAAGAAGTGCCAAGCCCTGACAGCCCCCACAGACCTGGGGC
TGCCAGAAAGAGTGAGGCAGAGGGTCACATGGCATCAGAGGCCTCCAGAG
ACCCCAGGCTCTGGGCAGAGCCTCAGCTTACTCATCCGTAGCATGGGAGT
GTGCACGGGTCTTCAATACAGTATGTTCTTTTGGTCN
NTTTTTCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTCTGTCTGGAGGCTGGGCG
GCCTCCAGGCACGCCATTGGCTTCTTGCTGACCTCGTCCAGCTCCTAGGG
ATCCATCTGTTCTGGGTTCCCTGTCTCTCTCTGTCCTCTCTGCTCCCTCC
TAGAATAAAGCTCTCTGCTTGTTCTCTCCCATCCACATATCTTGCATGAC
TTTGACATGTGCCTTTGTTTACCTGTTTCTGCTGCCGCTCCAGAGGGGAT
GCTGGAGAGCAGGAGGAGAAGAGGTGTGTGTCCACGTGACTTTGCTCCAT
TTACAGCTCTGGGTTTCTTCCAAGGCCTCTGTCAGGAGGGGAGGGTACCT
CTGGGGAGGCATGGCCTGTGCTAGGTAGGCTGGTGACAGGGCATGGCCCA
AGACAGAGCTTGCCAGGACCAAAGCACCCTGAGATGGGAAACAGGACACT
GTGAGCTGTTCCAAGAGGCAGCGTGTCACTGTCCGTGGGTCCTTCTCCAC
CTGGGTCGGTCACAGGGATTCCACTCGTGTGGAAGTGGAGGGTTGGAGTG
GAGAAGGTTCTTGTTTGCAGTTCCTCCCACTCTCACTGGAAGGGAGTGTC
ACCTGATCTAGGGTCACATGGAAGGACAGCTACCCCCTCTTTTTCAGCCA
CTGGGTGACCAGAAGAGCTGGGTGGTGGGTCCTCTGAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_f16.b1 MSMg01no516_f16.b1 CHROMAT_FILE:
MSMg01no516_f16.b1 PHD_FILE: MSMg01no516_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:03 2005
         (373 letters)



>mm_chr8_122853201_122853973
          Length = 773

 Score =  690 bits (357), Expect = 0.0
 Identities = 369/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtctcaggagcctgtccctctgtgacacagtgaccaggcccatggaccactcagcccag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 573 tgtctcaggagcctgtccctctgtgacacagtgaccaggcccatgggccactcagcccag 514

                                                                       
Query: 61  cacaaccaaccacctcaccatcctgaccccaccccagcgcctgtcatatgtgtttcccaa 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 513 cacaaccaaccacctcaccatcctgaccccaccccagcccctgtcatatgtgtttcccaa 454

                                                                       
Query: 121 gtaaaacttcccctccccagatgtgcccatcctgggagcctggcatccatcacaggggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtaaaacttcccctccccagatgtgcccatcctgggagcctggcatccatcacaggggtg 394

                                                                       
Query: 181 gagatggtctggtgggcagcgagcaccggccctggcctgggaagcagagactcatcacac 240
           ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 393 gagatggtctggtgggcagcgagcaccagccctggcctgggaagcagagactcagcacac 334

                                                                       
Query: 241 aatgtcttgaaagtttatatggagcatcttatgcttaccagcaccatacccagtgttgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aatgtcttgaaagtttatatggagcatcttatgcttaccagcaccatacccagtgttgct 274

                                                                       
Query: 301 atagcaacgtctcagctcagtgctacataatgctgttggatgttgtaacggggtgccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atagcaacgtctcagctcagtgctacataatgctgttggatgttgtaacggggtgccagg 214

                        
Query: 361 gaggggtaggtaa 373
           |||||||||||||
Sbjct: 213 gaggggtaggtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no516_f16.g1 MSMg01no516_f16.g1 CHROMAT_FILE:
MSMg01no516_f16.g1 PHD_FILE: MSMg01no516_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:03 2005
         (567 letters)



>mm_chr8_122680953_122681919
          Length = 967

 Score = 1081 bits (559), Expect = 0.0
 Identities = 565/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactctgtctggaggctgggcggcctccaggcacgccattggcttcttgctgacctcgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactctgtctggaggctgggcggcctccaggcacgccattggcttcttgctgacctcgtc 260

                                                                       
Query: 61  cagctcctagggatccatctgttctgggttccctgtctctctctgtcctctctgctccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctcctagggatccatctgttctgggttccctgtctctctctgtcctctctgctccct 320

                                                                       
Query: 121 cctagaataaagctctctgcttgttctctcccatccacatatcttgcatgactttgacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaataaagctctctgcttgttctctcccatccacatatcttgcatgactttgacat 380

                                                                       
Query: 181 gtgcctttgtttacctgtttctgctgccgctccagaggggatgctggagagcaggaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcctttgtttacctgtttctgctgccgctccagaggggatgctggagagcaggaggag 440

                                                                       
Query: 241 aagaggtgtgtgtccacgtgactttgctccatttacagctctgggtttcttccaaggcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagaggtgtgtgtccacgtgactttgctccatttacagctctgggtttcttccaaggcct 500

                                                                       
Query: 301 ctgtcaggaggggagggtacctctggggaggcatggcctgtgctaggtaggctggtgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtcaggaggggagggtacctctggggaggcatggcctgtgctaggtaggctggtgaca 560

                                                                       
Query: 361 gggcatggcccaagacagagcttgccaggaccaaagcaccctgagatgggaaacaggaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggcatggcccaagacagagcttgccaggaccaaagcaccctgagatgggaaacaggaca 620

                                                                       
Query: 421 ctgtgagctgttccaagaggcagcgtgtcactgtccgtgggtccttctccacctgggtcg 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgagctgttccaagaggcagcgtggcactgtccgtgggtccttctccacctgggtcg 680

                                                                       
Query: 481 gtcacagggattccactcgtgtggaagtggagggttggagtggagaaggttcttgtttgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcacagggattccactcgtgtggaagtggagggttggagtggagaaggttcttgtttgc 740

                                      
Query: 541 agttcctcccactctcactggaaggga 567
           |||| ||||||||||||||||||||||
Sbjct: 741 agtttctcccactctcactggaaggga 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)