BAC Information

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BAC

Clone NameMSMg01-516J05
Chromosome8 (Build37)
Map Location 60,959,795 - 61,129,541
singlet/doubletdoublet
Overlap gene4930431L04Rik
Upstream geneSap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516J05.T7 (MSMg01no516_j05.b1)MSMg01-516J05.TJ (MSMg01no516_j05.g1)
ACCAG588538AG588539
length765765
length of high quality
(start - end)		662 (49 - 710)518 (77 - 594)
definitionCHROMAT_FILE: MSMg01no516_j05.b1 PHD_FILE: MSMg01no516_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:21 2005CHROMAT_FILE: MSMg01no516_j05.g1 PHD_FILE: MSMg01no516_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:48:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,128,884 - 61,129,541)(60,959,795 - 60,960,312)
sequence
NNATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGCCAGGTAATTAAAGTTAGAAAGAACAAGCTGGCTTCTC
TGTTTAGATCTTTTATCATTTTTATTCTACAATCAACACCTAAAATATAC
ACAATCATCCTGTTGGGTAATTGAGTAAATATTATTTGTATTTTTATATT
TTGGTACTTATGACAGATGAGGGAATCAATACACATTTCTAGGATGTAAA
GTTTACTGGGAAAATAATTCATTTTGTCAAAGTGGCTCAGGTTTGTTCTG
TCCCAGACCAAAACCCATGTCTACTGACATTTTGTCAATTTACAAACTTT
ACAAACGATTTGCAGATTTGTGTGGGTTACTTTGTAATTTTGCCTTGTGA
AATATACTTGTGACTCTATAAATTGTATATGTATCTGAGTCCTTCTCAAT
TTGAGGATAAATGCAAAGTTACCTGGCCATATAACATAAAGTATTTTGGG
ACATACACAGGATCTTTGAAGACTCATATTAGATACCACAGCCATTGTCA
GAATCTTCTGCCCAAGTCCAGAATTTCAACTTGGATTGTAACTATGTATC
TCTTGGTTAACAATAGTATATAGGACAAAAATTTAGAAAATGAATTTATT
TTGTGTTGGCTACATACACAAGGCATTAGGTTTATCCTTATGTTTGGTTA
ATATACCCACAGAGACCACATTGGATAAAACCATTTCTCTTTGNCAGCAC
ATCAGNTAGAGATGG

NCCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAGGAAATGGGAGTGGGT
GGGTTGGGGAGCATGGTTGGGATGGTATAGGGGAGTTTCGGGGTAGCATT
TGAAATGTAAATAAAGAAAATATCTAATAAAAATTGTTTAAAAAATTTAA
AAGTAATGATTGTCTCTCAACCCATGACAAGTCAATATTCTTGTTAGCTT
TGTGAAGTAACAGCCATTGGAAACATCCTGGAATATATTTGGCATTTTTA
AAGTTTTGCCTTCTCTGTTTTAAGCATCTGTCAAATTTCCATTATACCAT
TTTTCCTTTATGGCAATGCAGCAGGTAGACATTTTCTCACAGGTTTGTAA
AATGTAAATTAGAAGTTTCGCTATTTTCTTGTCCTTTATCAGTTTTTTCC
CTCATCATCTATTTGGCTTGTTCATTATTTTTATTTTATATTCCCATGCT
ACATTTAAGGTTAGCTGATTCATATAAAGGATGAGAAAGAGATTGACTGT
CTCTACCTATGTGAATACTCTATTGATCATTCTCTTGCCATGGCAGAGCT
TTGCTGCTTTGTGTAGGGATTCCAAGCTGGAGGTTAAATAGCTCTGTCCT
AAATTTCACATCAAAATTACACTAAAAAACCATAACTAAAATGAGCTCTC
TAACTCTTCTCTTCAACAGTTTTATTTTCCAAGGGAACAAATGAGACACG
TAATTACCTTTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_j05.b1 MSMg01no516_j05.b1 CHROMAT_FILE:
MSMg01no516_j05.b1 PHD_FILE: MSMg01no516_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:21 2005
         (662 letters)



>mm_chr8_61128781_61129842
          Length = 1062

 Score = 1265 bits (654), Expect = 0.0
 Identities = 657/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattgccaggtaattaaagttagaaagaacaagctggcttctctgtttagatctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 gaattcattgccaggtaattaaagttagaaagaacaagctggcttctctgtttagatctt 702

                                                                       
Query: 65  ttatcatttttattctacaatcaacacctaaaatatacacaatcatcctgttgggtaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttatcatttttattctacaatcaacacctaaaatatacacaatcatcctgttgggtaatt 642

                                                                       
Query: 125 gagtaaatattatttgtatttttatattttggtacttatgacagatgagggaatcaatac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gagtaaatattatttgtatttttatattttggtacttatgacagatgagggaatcaatac 582

                                                                       
Query: 185 acatttctaggatgtaaagtttactgggaaaataattcattttgtcaaagtggctcaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 acatttctaggatgtaaagtttactgggaaaataattcattttgtcaaagtggctcaggt 522

                                                                       
Query: 245 ttgttctgtcccagaccaaaacccatgtctactgacattttgtcaatttacaaactttac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ttgttctgtcccagaccaaaacccatgtctactgacattttgtcaatttacaaactttac 462

                                                                       
Query: 305 aaacgatttgcagatttgtgtgggttactttgtaattttgccttgtgaaatatacttgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaacgatttgcagatttgtgtgggttactttgtaattttgccttgtgaaatatacttgtg 402

                                                                       
Query: 365 actctataaattgtatatgtatctgagtccttctcaatttgaggataaatgcaaagttac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 actctataaattgtatatgtatctgagtccttctcaatttgaggataaatgcaaagttac 342

                                                                       
Query: 425 ctggccatataacataaagtattttgggacatacacaggatctttgaagactcatattag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctggccatataacataaagtattttgggacatacacaggatctttgaagactcatattag 282

                                                                       
Query: 485 ataccacagccattgtcagaatcttctgcccaagtccagaatttcaacttggattgtaac 544
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 281 ataccacagccattgtcagaatcttctgcccaaggccagaatttcaacttggattgtaac 222

                                                                       
Query: 545 tatgtatctcttggttaacaatagtatataggacaaaaatttagaaaatgaatttatttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tatgtatctcttggttaacaatagtatataggacaaaaatttagaaaatgaatttatttt 162

                                                                     
Query: 605 gtgttggctacatacacaaggcattaggtttatccttatgtttggttaatatacccac 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 gtgttggctacatacacaaggcattaggtttatccttatgtttggttaatatacccac 104


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no516_j05.g1 MSMg01no516_j05.g1 CHROMAT_FILE:
MSMg01no516_j05.g1 PHD_FILE: MSMg01no516_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:22 2005
         (518 letters)



>mm_chr8_60959595_60960512
          Length = 918

 Score =  924 bits (478), Expect = 0.0
 Identities = 508/518 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggccaggaaatgggagtgggtgggttggggagcatggttgggatggtataggggagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagggccaggaaatgggagtgggtgggttggggagcatggttgggatggtataggggagt 260

                                                                       
Query: 61  ttcggggtagcatttgaaatgtaaataaagaaaatatctaataaaaattgtttaaaaaat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcagggtagcatttgaaatgtaaataaagaaaatatctaataaaaattgtttaaaaaat 320

                                                                       
Query: 121 ttaaaagtaatgattgtctctcaacccatgacaagtcaatattcttgttagctttgtgaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 321 ttaaaagtaatgattgtctctcaatccatgacaagtcaatattcttgttagctttatgaa 380

                                                                       
Query: 181 gtaacagccattggaaacatcctggaatatatttggcatttttaaagttttgccttctct 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaacagccactggaaacatcctggaatatatttggcatttttaaagttttgccttctct 440

                                                                       
Query: 241 gttttaagcatctgtcaaatttccattataccatttttcctttatggcaatgcagcaggt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 gttttaagcatctgtcaaatttccattataccatttttcctttatggcaatgcagcgggt 500

                                                                       
Query: 301 agacattttctcacaggtttgtaaaatgtaaattagaagtttcgctattttcttgtcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacattttctcacaggtttgtaaaatgtaaattagaagtttcgctattttcttgtcctt 560

                                                                       
Query: 361 tatcagttttttccctcatcatctatttggcttgttcattatttttattttatattccca 420
           ||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tataagatttttcccccatcatctatttggcttgttcattatttttattttatattccca 620

                                                                       
Query: 421 tgctacatttaaggttagctgattcatataaaggatgagaaagagattgactgtctctac 480
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 621 tgctacatttaaggttagctgattcatagaaaggatgagaaacagattgactgtctctac 680

                                                 
Query: 481 ctatgtgaatactctattgatcattctcttgccatggc 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctatgtgaatactctattgatcattctcttgccatggc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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