Query= MSMg01no516_p03.b1 MSMg01no516_p03.b1 CHROMAT_FILE:
MSMg01no516_p03.b1 PHD_FILE: MSMg01no516_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:52 2005
(698 letters)
>mm_chr8_55186331_55187428
Length = 1098
Score = 1033 bits (534), Expect = 0.0
Identities = 586/612 (95%), Gaps = 14/612 (2%)
Strand = Plus / Minus
Query: 87 atataaataaaatgcaatatttttcaaccactgaaatgcaactttgtgttatatacaacc 146
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 1098 atataaataaaatgcaatattcttcaaccactgaaatgcatctttgtgttatatacaacc 1039
Query: 147 aaatctcaaagtatttggtaaagtcatttgagactgaaataaaattattttatggtttgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1038 aaatctcaaagtatttggtaaagtcatttgagactgaaataaaattattttatggtttgc 979
Query: 207 cttaactgctgaaagttctttctagtatcaaagaacatactacagaactttagtactttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 cttaactgctgaaagttctttctagtatcaaagaacatactacagaactttagtactttc 919
Query: 267 tggaatcaaagagcatgctataggactatagaaggcttgggaaagaagagtgaagaaaga 326
|||||||||||| ||| ||| ||||||||||||||| ||||||||||
Sbjct: 918 tggaatcaaagaccat--------------gaaagcttgggaaagaagattgaagaaaga 873
Query: 327 aaactaagagcaagttgttaaaaggtataaaagcacagaggaaagtaataaggaaagcac 386
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aaagtaagagcaagttgttaaaaggtataaaagcacagaggaaagtaataaggaaagcac 813
Query: 387 ttgatcaatgagaagcaaaactgattcttcctttaatttcagctgattcattatgctcaa 446
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 812 ttgatcaatgagaagcaaaactgattcttcctttattttcagctgattcattatgctcaa 753
Query: 447 taaatattcatttaaatgctaattttcagaaacccagatatacacttagaagaacaactt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 taaatattcatttaaatgctaattttcagaaacccagatatacacttagaagaacaactt 693
Query: 507 catttcaaatcaaaataaaaaaggcaagttaatattctacacttttgaaaccaacatgcc 566
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 692 catttcaaatcaaaataaaaaaggcaagttaatattctacacttttgaaacctacatgcc 633
Query: 567 ctcagtaaatttctaggaagaaaaaagtagaaaccataatcgtcaataatatataacata 626
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 632 ctcagtaaatttctaggaagaaaaaagtagaaaccataatcatcaataatatataacata 573
Query: 627 gagtggatttacgctatgcatattatgtacttcttgaaagaaaaacatacactttgggat 686
|||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||
Sbjct: 572 gagtggatttacgctatgcacataatgtacttcttgaaaaaaaaacatacactttgggat 513
Query: 687 ctttaatttgtg 698
||||||||||||
Sbjct: 512 ctttaatttgtg 501
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_p03.g1 MSMg01no516_p03.g1 CHROMAT_FILE:
MSMg01no516_p03.g1 PHD_FILE: MSMg01no516_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:52 2005
(612 letters)
>mm_chr8_55026091_55027100
Length = 1010
Score = 1106 bits (572), Expect = 0.0
Identities = 600/610 (98%), Gaps = 2/610 (0%)
Strand = Plus / Plus
Query: 3 aaggaaaatatattatcaccattttatttgttaataattatactctatgcattttagact 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaggaaaatatattatcaccattttatttgttaataattatactctatgcattttagact 262
Query: 63 tcatttttggatattatttcttaagttattatatttattgcttgaaaatttcataaatgc 122
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcatttttggaaattatttcttaagttattatatttattgcttgaaaatttcataaatgc 322
Query: 123 atgcattttaaatttctaattcaatataatatcagcatttatttcttaattttccccttt 182
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 323 atgcattttaaatttctaattcaatataatattagcatttatttcttaattctccccttt 382
Query: 183 cagtgtaaattatttaattagcttttctacaaattctagaaaggatgtcttcattatttc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 cagtgtaaattatttaattagcttttctacaaattctagaaaggatgtcttcattatatc 442
Query: 243 ctaatgtacttctccacctgaagttttatttctttatgcgttttcggtttctgatcctaa 302
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctaatgtacttcttcacctgaagttttatttctttatgcgttttcggtttctgatcctaa 502
Query: 303 gctagatcctttctcctcttggaattatagaaccaattaggaaacccagcattagcagac 362
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 503 gctagatcctttctcctcttggaattatagagccaattaggaaacccagcattaggagac 562
Query: 363 taatgaaagaaagcctattcttgggcaaagcatcagaaaatcaaagagaaagactctcaa 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 taatgaaagaaagcctattcttgggcaaagcatcagaaaatcaaagagaaagactc--aa 620
Query: 423 atctacctctaagtccttacaaaggctaataatctttctgagagtaaagagacagtgggg 482
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atccacctctaagtccttacaaaggctaataatctttctgagagtaaagagacagtgggg 680
Query: 483 aggattttaattagcaagcaagagaactgtttctggctcattcctggaaaggagttagtt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggattttaattagcaagcaagagaactgtttctggctcattcctggaaaggagttagtt 740
Query: 543 ggattttgtttcacagacagagaaactcttcctttaatccttatgtgggtgtttcctgtg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggattttgtttcacagacagagaaactcttcctttaatccttatgtgggtgtttcctgtg 800
Query: 603 caagcaagaa 612
||||||||||
Sbjct: 801 caagcaagaa 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1010
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1000
Effective search space: 602000
Effective search space used: 602000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
