BAC Information

Click to search

BAC

Clone NameMSMg01-517F15
Chromosome8 (Build37)
Map Location 13,324,144 - 13,324,744
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040175, EG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3
Downstream geneTfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517F15.T7 (MSMg01no517_f15.b1)MSMg01-517F15.TJ (MSMg01no517_f15.g1)
ACCAG589123AG589124
length770797
length of high quality
(start - end)
589 (34 - 622)219 (66 - 284)
definitionCHROMAT_FILE: MSMg01no517_f15.b1 PHD_FILE: MSMg01no517_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:24 2005CHROMAT_FILE: MSMg01no517_f15.g1 PHD_FILE: MSMg01no517_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGGCCGCTATAAACTCACTATTCGGAGAGGATCCGCGGAATTCTTTTT
CCCAAAAAGTTTATTCTTGAAAGGTAGATTATAGGCACCTTCCAGAGGTT
GGTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTG
TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAA
ACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTCA
CCCTGCCCAAATAATATTTTGTAATGATTTTTTTATGTGCATTGGTATTT
TGCCTGCATATCTGTGTGAGAGTGCCAGGTACCCTGGGATTGGAGTTATA
AATAGCCATGAGCTGCCATGTGAATACTGGAAATTGAACCCAGGTCCTCT
GGAAGAGCAGCCAGGGCACACTGCAGACTTAGGAGGTTGAAGACCTAGAT
GGAAAATTGTCCAGACCATGGTGAACTGACTGTAGGTGGAGGCTGCCTGG
AAGGGGTGGGCTTCTGTGACTGGCAGGCATCCGAGCCAGCTCTGACCCCG
CAGCACTGAGCTATCTCAGCTGGTGCTTGCTAGCGTCATGGAGAAGCAGC
CTTGGTATGGTCCTGCAGGACCAGCAGTTCTCACCTTTCTTGTGCATTTC
AGCCAAGTAACTGGTCTGTTAAACCCAAAAACTGCACCGTGGGAGCTAAA
TTTCAGGGTTGGATGACAAAGATTTCCAAACAGATACCTTTGGGTCGCTA
CCCTCCAACCCTATGACGCA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGGGGCAGACTGGTCTATATAGTGAGTTTAAGGCT
AGACTGAGTTAAACAGTAAGACCCTGTCTCAAAAATTAAAGAAAGGCAGA
CAGATAGAAAGACAAAAAGAGAGACACAGAGAGAAATGAAGGAAGGAGGG
AAGGAAGAGAAAGGAAGAAAGAGAGGGGGAGGGAAGGGGAGGAAGGAAAA
AAGGAAGGAAGGTAAAAAGGAAGGAAGAGGGAGGGATGTACCTATTTATT
CTCCCCCTTTTTTTTTTCCTCTCTATCGATTGGTAGCCTCGTTCTCTTCT
TTCTTCCCCTCCCCCCTGCCTCTGTTGGTTGCTCGTTTTTTTTTTGCTTT
TATTGGGTCCCCCCTTTCACCTCTTTTTCCCTTTCTTTTTTTCTCCCCCT
TTCTTTTATTCCTCTTTTTTCGTTCTTTTTTTCCCCATCTTTTTTTTTTT
TTTTTCTACCCCCTCCCCATATCCCTTTTTCTTTTCTCTTTCTTTATTCT
ACTTGATTCCTTTCCCCTCGTTTTTTATTATCCGATCTGTATTTTATCTT
TCGCCTCTCTCTGTTTTTCTTTTTCTAACCCTCTTTTTTATCCCTTTTTT
TTCCTCATTGTCGCTTCTTTTTATTCCTTTTTTTTTTCTTCAAATTTCTT
GGCCCCCCATCCTGTTTTTACCTTCTTCTTTTCTTTCCCCCTTTCTCTTC
TTTTCCTTTTTTTTCCTTTTATCTTTCTTCTTTCTTCACTTCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_f15.b1 MSMg01no517_f15.b1 CHROMAT_FILE:
MSMg01no517_f15.b1 PHD_FILE: MSMg01no517_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:24 2005
         (589 letters)



>mm_chr8_13323956_13324944
          Length = 989

 Score = 1029 bits (532), Expect = 0.0
 Identities = 578/602 (96%), Gaps = 19/602 (3%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctttttccc-aaaaagtttattcttgaaaggtagattataggcaccttccagag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ggaattctttttccccaaaaagtttattcttgaaaggtagattataggcaccttccagag 248

                                                                       
Query: 65  gttggtttctttctttcttt-ttt-ttt-ttt--------------ttttttcgagacag 107
           |||||||||||||||||||| ||| ||| |||              |||||||| || ||
Sbjct: 249 gttggtttctttctttctttctttctttctttctttctttctttctttttttcgggaaag 308

                                                                       
Query: 108 ggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcaa 167
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 309 ggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggcctcga 368

                                                                       
Query: 168 actcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggtcaccctgcccaa 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 actcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggtcaccctgcccaa 428

                                                                       
Query: 228 ataatattttgtaatgatttttttatgtgcattggtattttgcctgcatatctgtgtgag 287
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 429 ataatattttgtaatgatttttt-atgtgcattggtattttgcctgcatatctgtgtgag 487

                                                                       
Query: 288 agtgccaggtaccctgggattggagttataaatagccatgagctgccatgtgaatactgg 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agtgccaggtaccctgggattggagttataaatagccatgagctgccatgtgaatactgg 547

                                                                       
Query: 348 aaattgaacccaggtcctctggaagagcagccagggcacactgcagacttaggaggttga 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aaattgaacccaggtcctctggaagagcagccagggcacactgcagacttaggaggttga 607

                                                                       
Query: 408 agacctagatggaaaattgtccagaccatggtgaactgactgtaggtggaggctgcctgg 467
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 agacctagatggaaacttgtccagaccatggtgaactgactgtaggtggaggctgcctgg 667

                                                                       
Query: 468 aaggggtgggcttctgtgactggcaggcatccgagccagctctgaccccgcagcactgag 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaggggtgggcttctgtgactggcaggcatccgagccagctctgaccccgcagcactgag 727

                                                                       
Query: 528 ctatctcagctggtgcttgctagcgtcatggagaagcagccttggtatggtcctgcagga 587
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ctatctcagctggtacttgctagcgtcatggagaagcagccttggtatggtcctgcagga 787

             
Query: 588 cc 589
           ||
Sbjct: 788 cc 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)