BAC Information

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BAC

Clone NameMSMg01-517I06
Chromosome8 (Build37)
Map Location 126,765,799 - 126,932,606
singlet/doubletdoublet
Overlap geneGalnt2, Pgbd5
Upstream gene1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535
Downstream geneCog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517I06.T7 (MSMg01no517_i06.b1)MSMg01-517I06.TJ (MSMg01no517_i06.g1)
ACCAG589249AG589250
length753749
length of high quality
(start - end)
626 (39 - 664)542 (67 - 608)
definitionCHROMAT_FILE: MSMg01no517_i06.b1 PHD_FILE: MSMg01no517_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:38 2005CHROMAT_FILE: MSMg01no517_i06.g1 PHD_FILE: MSMg01no517_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,765,799 - 126,766,416)(126,932,170 - 126,932,606)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
GACCTTCAGAAGAACAGTCAGTGCTCTTAACTGCTGAGCCATCTCGCCAG
CCCCGATGTCCTTTGTTTTAGAAAGGGATGGACTATTTACCCTTCCTGGC
CTGGGCTGTCATCATATCAGTAATGTTTGACTTTAGCATTTTTCTCCTCA
ATGGGACATGGGTGGCACATACTGTCGTTTGCCTGTTCTGGCCTCCCAAG
CTGCCTGGGTCCAGGAGCAGGTCCAGTGTGGAGCCTGAGAGCAATCCAGT
GGTTTGCAAACAGTAGCTTCTTTGCCACCTGGCCACCGAGTCATGGAGAT
CGTAATACTAAGGGTTGCACAGAAACTCTGAAGGCCACTTTGCAGGGGTT
GGAGACAACCTAGATACTGCACTGAAGCTGGCCCTGGGTCCCTCTGTAGG
ACTGGTATGACGTGGCAAAGAGGATATAGCAAAGTATTGGGCTTGGGCCT
AAGCCAGAGTGCCTGCGTATGAATTCTTGCTTCCTGGGTGGCTCTGTGAC
CTCAGGGAAGTCACTTAGTCTTTGTGTGGTTTTGTCTTTTGCCTGTCTCA
GCAGTTTCCAGTGTGCAGCGTGTTAGTATGTATAAACTGTTTGGATTGGT
CCTGCTGTGCACACAGCAGATGCTCGGTAGTATGAGGCATTGTGAAAGCT
GTTGTTAGTGTTAAGTGTTAAAGATGGGTGCCAAGTAATGGCGTATGGTA
AAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGTGGGCTGATAGCCACTTGCCACTTACGTAG
GTTCTAGGGACTTCAACTCCAGTCTTCACGCGTGTGCTGCAAGCACTTAC
TCCGAGGCCCTGTGTATTTACTTTTGAGACAGGGGGTCTCACGTAACACA
GGGTGGTCTCACATACAGCAGAGGGTGACCTTGAACTTCTGACCTGCCTC
CTTTTGCTCCCAAGTGCCAGGATTACTATTGTACCCAGTTGCTATAGTGC
TAGGATTGATCTAAGGGCTTTGTATGTGCTACACGGTGCTCTCAGCAACC
GTGCTATATAGCTCCAGTCCCCAGCATATATGTTTAATATAAGGAAAATT
CCAGTCACTTCACAGAGCCACCAAAGGTGTGGGTCCATCACATGCCTCCT
CAGGTGAAGGAATTTGCTCAACATGGGGCTCACCTCAGCTTCTTTAGCTT
CCTCTTGGCCTTTCCAGGGAACTGGCGCAAATGGATAGAGCTGGCTGACA
AGAGTCTACACCGGGCTGTCCCGGCTTCTTCCTTCCCATTCTCAGACTTG
ATTCAACCAAAGCCAGAGGCCATAGAGCCCCTCTGCCACCTTCTTTCCCA
GAACAGTGACATGTGGCTGGCTCTTCAGGAGGCCTCAGAGCCAGCTTACT
CTGCAGTTGATTCCTGGGCCAGTGTGGGTAATAAAACCAGAGGAACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_i06.b1 MSMg01no517_i06.b1 CHROMAT_FILE:
MSMg01no517_i06.b1 PHD_FILE: MSMg01no517_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:38 2005
         (626 letters)



>mm_chr8_126765595_126766620
          Length = 1026

 Score = 1164 bits (602), Expect = 0.0
 Identities = 614/618 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggaccttcagaagaacagtcagtgctcttaactgctgagccatctcgccagcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 205 gaattcaggaccttcagaagaacagtcagtgctcttaactgctgagccatctctccagcc 264

                                                                       
Query: 65  ccgatgtcctttgttttagaaagggatggactatttacccttcctggcctgggctgtcat 124
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccgatgtcctttgttttaggaagggatggactatttacccttcctggcctgggctgtcat 324

                                                                       
Query: 125 catatcagtaatgtttgactttagcatttttctcctcaatgggacatgggtggcacatac 184
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 catatcagtagtgtttgactttagcatttttctcctcaatgggacatgggcggcacatac 384

                                                                       
Query: 185 tgtcgtttgcctgttctggcctcccaagctgcctgggtccaggagcaggtccagtgtgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcgtttgcctgttctggcctcccaagctgcctgggtccaggagcaggtccagtgtgga 444

                                                                       
Query: 245 gcctgagagcaatccagtggtttgcaaacagtagcttctttgccacctggccaccgagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctgagagcaatccagtggtttgcaaacagtagcttctttgccacctggccaccgagtc 504

                                                                       
Query: 305 atggagatcgtaatactaagggttgcacagaaactctgaaggccactttgcaggggttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atggagatcgtaatactaagggttgcacagaaactctgaaggccactttgcaggggttgg 564

                                                                       
Query: 365 agacaacctagatactgcactgaagctggccctgggtccctctgtaggactggtatgacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agacaacctagatactgcactgaagctggccctgggtccctctgtaggactggtatgacg 624

                                                                       
Query: 425 tggcaaagaggatatagcaaagtattgggcttgggcctaagccagagtgcctgcgtatga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggcaaagaggatatagcaaagtattgggcttgggcctaagccagagtgcctgcgtatga 684

                                                                       
Query: 485 attcttgcttcctgggtggctctgtgacctcagggaagtcacttagtctttgtgtggttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attcttgcttcctgggtggctctgtgacctcagggaagtcacttagtctttgtgtggttt 744

                                                                       
Query: 545 tgtcttttgcctgtctcagcagtttccagtgtgcagcgtgttagtatgtataaactgttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtcttttgcctgtctcagcagtttccagtgtgcagcgtgttagtatgtataaactgttt 804

                             
Query: 605 ggattggtcctgctgtgc 622
           ||||||||||||||||||
Sbjct: 805 ggattggtcctgctgtgc 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no517_i06.g1 MSMg01no517_i06.g1 CHROMAT_FILE:
MSMg01no517_i06.g1 PHD_FILE: MSMg01no517_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:38 2005
         (542 letters)



>mm_chr8_126931665_126932606
          Length = 942

 Score =  768 bits (397), Expect = 0.0
 Identities = 427/437 (97%)
 Strand = Plus / Minus

                                                                       
Query: 106 ttttgagacagggggtctcacgtaacacagggtggtctcacatacagcagagggtgacct 165
           |||||||||||||||||||||  |||||||||||| |||||||| |||||||||||||||
Sbjct: 942 ttttgagacagggggtctcacaaaacacagggtggcctcacatatagcagagggtgacct 883

                                                                       
Query: 166 tgaacttctgacctgcctccttttgctcccaagtgccaggattactattgtacccagttg 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 tgaacttctgacctgcctccttttgctcccaagtgccaggattactattgtacccagttg 823

                                                                       
Query: 226 ctatagtgctaggattgatctaagggctttgtatgtgctacacggtgctctcagcaaccg 285
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 822 ctatagtgctaggattgatctaagggctttgtacgtgctacacggtgctctcagcaactg 763

                                                                       
Query: 286 tgctatatagctccagtccccagcatatatgtttaatataaggaaaattccagtcacttc 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tgctatatagctccagtccccagcatatatgtttaatataaggaaaattccagtcacttc 703

                                                                       
Query: 346 acagagccaccaaaggtgtgggtccatcacatgcctcctcaggtgaaggaatttgctcaa 405
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 702 acagagccaccaaaggtgtgggtccatcacatgcctcctcaggtgaaggaatttgcccaa 643

                                                                       
Query: 406 catggggctcacctcagcttctttagcttcctcttggcctttccagggaactggcgcaaa 465
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 642 catggggctcacctcagcttttttagcttcctcttggcctttccagggaactggcgcaaa 583

                                                                       
Query: 466 tggatagagctggctgacaagagtctacaccgggctgtcccggcttcttccttcccattc 525
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 582 tggatagagctggctgacaagagtctacacggggctgtcccggcttcttccttcccgttc 523

                            
Query: 526 tcagacttgattcaacc 542
           |||||||||||||||||
Sbjct: 522 tcagacttgattcaacc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)