BAC Information

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BAC

Clone NameMSMg01-517I16
Chromosome8 (Build37)
Map Location 87,797,194 - 87,797,801
singlet/doubletsinglet
Overlap geneVps35
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371
Downstream geneOrc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-517I16.T7 (MSMg01no517_i16.b1)MSMg01-517I16.TJ (MSMg01no517_i16.g1)
ACCAG589269AG589270
length757759
length of high quality
(start - end)		612 (37 - 648)594 (67 - 660)
definitionCHROMAT_FILE: MSMg01no517_i16.b1 PHD_FILE: MSMg01no517_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:40 2005CHROMAT_FILE: MSMg01no517_i16.g1 PHD_FILE: MSMg01no517_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:49:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACC
CTGTGGAACAAACCTTAAGTCCAAGTAGAAAGCCCTGGTTATTCCTAAAA
TATTCATTCCACTATTGTACCAATGGGCGAATTTTGTCAAACTGGTTGTT
ACTGTAGCTTAAAAAGTTCACAGCTGGGTGAAACTGTTTATTCTAACTTT
TTTACAAAAACACTGAATTATTTTGCTGATATTGTTTCATTATGTATCCA
CTTAGAAACTGTTGCCTTTTTTGTTGATAGTGTCAGGCTAATATTTTCTA
CTTTCTGTGTTGCAGGTAGATTCCATAATGAATTTGGTGTCCACATTGAT
TCAGGATCAGCCAGACCAACCTGTAGAAGACCCTGATCCAGAAGACTTCG
CTGATGAACAGAGCCTTGTTGGCCGATTTATTCATCTGCTACGTTCTGAT
GATCCTGACCAGCAGTATTTGGTATGAGTTATCTCTTACTGTAACCTTTC
CTCACGCTTAATGAGCAGAAAAGTGTTTAAAATGGTTTAATGCATTTTTT
GCATTGGTTTAAGGTGTTAAAAAACTTGTTACTGAATTAAAGTTCATGAC
CTTAAAAAAATTTATTTACCTATTTAGTTTTTTTGAGGCAAGTTCTCACT
GTAGCCATGTTGGCCTTAAAATTATGATCCTGCTGCCCTAGCTTCCTGAG
TGCTACAAATTCAGTTGTGTACCACCGTGCACAGCTGGGAATTTATTTTT
GTATAAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTCATCAAAGGGTCCTATAGGATACTTTCTTG
ATTCACGTGGGAGGGAGGGGCCAGCTCATTGTGATAGAGGTGTCACCCCT
GACAGGTGGCTCTGGATTGTTTAAGAAAGTAAGCTGAGCAAGCCAGTAAA
CACAATTTCCTCTGTGAGTCGCTTCAATTCCCCAAGTTCCGTTCTTGAGC
TGTGTGACCCTGGACGTCCCTCAGTGATGGACTGCGGCTGGGAAGTATTC
TGGATAGTTCTGCCAACCTGACACAAACTAAAGGCACTGATGGGGAAGGG
AACTTCAATTAAGAAAATGCCCCCTGCAGGTTGGTGGTGGCACAGGCCTT
TAACCCCAGCATTCAGGAGGCAGAGGCAGGTAGATCTCTGTGGGCTAGAG
GCCAGCCTCGTCTACAAAGTGACTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTTCCTTCCCTCCTTTCCTCCTTCCTTTCTTTCTA
AAAAAAATTATTTATTTATTTATTTATTTTATGAAATTCAGTAATCCTCC
CTTCGACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no517_i16.b1 MSMg01no517_i16.b1 CHROMAT_FILE:
MSMg01no517_i16.b1 PHD_FILE: MSMg01no517_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:40 2005
         (612 letters)



>mm_chr8_87796827_87797838
          Length = 1012

 Score = 1160 bits (600), Expect = 0.0
 Identities = 606/608 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaccctgtggaacaaaccttaagtccaagtagaaagccctggttattcctaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 gaattctaccctgtggaacaaaccttaagtccaagtagaaagccctggttattcctaaaa 916

                                                                       
Query: 65  tattcattccactattgtaccaatgggcgaattttgtcaaactggttgttactgtagctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 tattcattccactattgtaccaatgggcgaattttgtcaaactggttgttactgtagctt 856

                                                                       
Query: 125 aaaaagttcacagctgggtgaaactgtttattctaacttttttacaaaaacactgaatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aaaaagttcacagctgggtgaaactgtttattctaacttttttacaaaaacactgaatta 796

                                                                       
Query: 185 ttttgctgatattgtttcattatgtatccacttagaaactgttgccttttttgttgatag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttttgctgatattgtttcattatgtatccacttagaaactgttgccttttttgttgatag 736

                                                                       
Query: 245 tgtcaggctaatattttctactttctgtgttgcaggtagattccataatgaatttggtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgtcaggctaatattttctactttctgtgttgcaggtagattccataatgaatttggtgt 676

                                                                       
Query: 305 ccacattgattcaggatcagccagaccaacctgtagaagaccctgatccagaagacttcg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccacattgattcaggatcagccagaccaacctgtagaagaccctgatccagaagacttcg 616

                                                                       
Query: 365 ctgatgaacagagccttgttggccgatttattcatctgctacgttctgatgatcctgacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ctgatgaacagagccttgttggccgatttattcatctgctacgttctgatgatcctgacc 556

                                                                       
Query: 425 agcagtatttggtatgagttatctcttactgtaacctttcctcacgcttaatgagcagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agcagtatttggtatgagttatctcttactgtaacctttcctcacgcttaatgagcagaa 496

                                                                       
Query: 485 aagtgtttaaaatggtttaatgcattttttgcattggtttaaggtgttaaaaaacttgtt 544
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 495 aagtgtttaaaatggtttaatgcagcttttgcattggtttaaggtgttaaaaaacttgtt 436

                                                                       
Query: 545 actgaattaaagttcatgaccttaaaaaaatttatttacctatttagtttttttgaggca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actgaattaaagttcatgaccttaaaaaaatttatttacctatttagtttttttgaggca 376

                   
Query: 605 agttctca 612
           ||||||||
Sbjct: 375 agttctca 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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