XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCCCATTTTTATTGTGTGAGGTTCAATGTATGTTTTCAGCTTTAATATAG
TTCATTTTATGAATGTGGATGCCCTTGCATTTGGGTCATAGATTTCAAAA
TTGAGACTTTTGCTTGGTGGACTTTCCCTTTTATGAATATAACGTGTCCT
TTCTTATCACTCTTGATAACTTTTGTTTGAAAGTCTATTTTATTGATATT
AGAGTGACTGGCTACTCTAGCTTATTTCCTGGGACCATTTGCTTGGGTGA
TCTTTTTCTATCCTTTTACTCTGAGATAGTGTTTACCTTTGTTATTTGTT
ATTAGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAAAATC
TTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAGGAGTGCAAGA
AGCAAGAGAGAGAGAAAACGAAACCCCATCCCTATTAAGGAGAATTATCC
TTCGCCTCGGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGT
TGACGTCACGGGGAAGGCAGAGTACAAGTAGTCACAAAATACCCTTGGCA
CATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATC
TTGTAACGGCGAATGTGGGCGCGGCTCCCAACATCTCCCCCTTTCCTTTT
AATAAGAGCAAATAGGCCACCCATATTAATGAGAGTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCATAAATGAGAATTTAAACTATTAGTACATC
CAAGCGTACAAAGCTATTAAGTCATATTCAGGTTCAAATTTAAGCCTTTC
TAATTTCTAAAATTTTTACTATTGACTTAATTTATATTTACTCTGTTGTA
GGGGGTCTTAATATATGTACTTGCTGTTCAAAACTTAAAAATCTCAAGGA
TAAAAAAAAATACCTCTGAATGCCCAGCAAGTTTTACAGTGCCCGGAACA
TCACAGGTGCTTAATCAACACTTACTGGTAAGAAAAGTACATGGTAGTAT
AATAATAAGCTAGATTAGAAATACATTTGGTAAATTTCCAATCTGTCCAT
TTTCTGTTATTCTGGAAATTGGATTAACTTGTCAAGCAGGGCCTGGGAAC
CAGTAGAATGGTTCTCACAAAGCTTGTCAAAAAGGCTGACTTTCAGACCT
CAACTTAGAGTCAACACCTAGTAATTTGTATGCAAATTTAAGAAGGACTG
GCCTGTCAAAGAGAGTTCACTAAGGCAGAATGGCTTTGAATATCTTCACA
GACTGGCACATTAGATACTCCGATACCCCCTCTGTCCTGCTTACTTTCTG
GAGTCCAAATGGCTTCTTTTAGAAAGAGTGCATTGTTCATTAATAGTGGC
AAGTGTTGAGGTTACACCCTTTATAAACAAAGAGAATGGTGCAAAAGGTG
GAAA

Query= MSMg01no517_k09.g1 MSMg01no517_k09.g1 CHROMAT_FILE:
MSMg01no517_k09.g1 PHD_FILE: MSMg01no517_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:48 2005
         (606 letters)



>mm_chr8_100363614_100364619
          Length = 1006

 Score = 1122 bits (580), Expect = 0.0
 Identities = 598/606 (98%), Gaps = 5/606 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcataaatgagaatttaaactattagtacatccaagcgtacaaagctattaagtcatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcataaatgagaatttaaactattagtacatccaagcgtacaaagctattaagtcatat 260

                                                                       
Query: 61  tcaggttcaaatttaagcctttctaatttctaaaatttttactattgacttaatttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggttcaaatttaagcctttctaatttctaaaatttttactattgacttaatttatat 320

                                                                       
Query: 121 ttactctgttgtagggggtcttaatatatgtacttgctgttcaaaacttaaaaatctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactctgttgtagggggtcttaatatatgtacttgctgttcaaaacttaaaaatctcaa 380

                                                                       
Query: 181 ggataaaaaaaaatacctctgaatgcccagcaagttttacagtgcccggaacatcacagg 240
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggataaaaaaa--tacctctgaatgcccagcaagttttacagtgcccggaacatcacagg 438

                                                                       
Query: 241 tgcttaatcaacacttactggtaagaaaagtacatggtagtataataataagctagatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgcttaatcaacacttactggtaagaaaagtacatggtagtataataataagctagatta 498

                                                                       
Query: 301 gaaatacatttggtaaatttccaatctgtccattttctgttattctggaaattggattaa 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 499 gaaatacatttggtaaatttccaatctgtccgttttctgttattctggaaactggattaa 558

                                                                       
Query: 361 cttgtcaagcagggcctgggaaccagtagaatggttctcacaaagcttgtcaaaaaggct 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttgtcaagcagggcctggaaaccagtagaatggttctcacaaagcttgtcaaaaaggct 618

                                                                       
Query: 421 gactttcagacctcaacttagagtcaacacctagtaatttgtatgcaaatttaagaagga 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
Sbjct: 619 gactttcagacctcaacttagagtcaacacctagtaatttgtatgcaaatttaag---ga 675

                                                                       
Query: 481 ctggcctgtcaaagagagttcactaaggcagaatggctttgaatatcttcacagactggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctggcctgtcaaagagagttcactaaggcagaatggctttgaatatcttcacagactggc 735

                                                                       
Query: 541 acattagatactccgataccccctctgtcctgcttactttctggagtccaaatggcttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 acattagatactccgataccccctctgtcctgcttactttctggagtccaaatggcttct 795

                 
Query: 601 tttaga 606
           ||||||
Sbjct: 796 tttaga 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)