Query= MSMg01no518_d07.b1 MSMg01no518_d07.b1 CHROMAT_FILE:
MSMg01no518_d07.b1 PHD_FILE: MSMg01no518_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:32 2005
(692 letters)
>mm_chr8_10513309_10514401
Length = 1093
Score = 1249 bits (646), Expect = 0.0
Identities = 681/700 (97%), Gaps = 12/700 (1%)
Strand = Plus / Minus
Query: 5 gaattcataaatgtctgtgtggttacaatgtgtccagaaatctcagataatggataagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 855 gaattcataaatgtctgtgtggttacaatgtgtccagaaatctcagataatggatcagga 796
Query: 65 tattcgtttcaaagtgggaatattgctaaataaactgcagacacaacaagaccattggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tattcgtttcaaagtgggaatattgctaaataaactgcagacacaacaagaccattggga 736
Query: 125 cctacaacatctaatggacagttctatggggggaatagtcagaacgaaagtaaactttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 735 cctacaacatctaatggacagttctatggggggaatagtcagaacgaaagtaaacattta 676
Query: 185 aaactatttagtcactaataaacatgccaccattagtacattcatatgacgtatcaataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaactatttagtcactaataaacatgccaccattagtacattcatatgacgtatcaataa 616
Query: 245 gtattatgtttcaaatacaagctacagagctccacaagtaaaccgcacagagaattacat 304
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 atattatgtttcaaatacaagctacagagctccacaagtaaactgcacagagaattacat 556
Query: 305 cagccattcaagtgttgtccatacaatgggtgtttgctgtcaacctgtcagctggcttag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cagccattcaagtgttgtccatacaatgggtgtttgctgtcaacctgtcagctggcttag 496
Query: 365 ggctgtcattgagcagccttttcctaacaataaactgtctgctgggaatggcagagagtg 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 495 ggctgtcattgagcagccttttcctaacaataaactgtttgctgggaatggcagagagtg 436
Query: 425 aagaagctaacagagacagagatgagacttacaacccctatgctcagctatgacatctgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aagaagctaacagagacagagatgagacttacaacccctatgctcagctatgacatctgg 376
Query: 485 agcctgatgaacaaagactgggccaaagacaaacagaaaggggagccttagagactgaag 544
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 375 agcctgatgaacaaagactgggccaaggacaaacagaaaggggagccttagagactgaag 316
Query: 545 atttagtcaaacatccccagttcctgggaaaatccctcctcttgtcagagttgctctttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atttagtcaaacatccccagttcctgggaaaatccctcctcttgtcagagttgctctttt 256
Query: 605 gtttcattgtaacttttacatttattctgggcatagaatcctt------------gagaa 652
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 255 gtttcattgtaacttttacatttattctgggcatagaatccttgaagaacttttagagaa 196
Query: 653 ctctgggtaaggcacagggtggggaatggaatgcactgac 692
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 195 ctctgggtaaggctcagggtggggaatggaatgcactgac 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1093
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1083
Effective search space: 738606
Effective search space used: 738606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_d07.g1 MSMg01no518_d07.g1 CHROMAT_FILE:
MSMg01no518_d07.g1 PHD_FILE: MSMg01no518_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:32 2005
(552 letters)
>mm_chr8_10405603_10406554
Length = 952
Score = 992 bits (513), Expect = 0.0
Identities = 543/553 (98%), Gaps = 2/553 (0%)
Strand = Plus / Plus
Query: 1 actcgccaccacttatggatttataaacctcttatttgtaccctagaactgtcttataat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 actcgccaccacttatggatttataaacctcttattcgtaccctagaactgtcttataat 260
Query: 61 aacgatgaccaggtgtgcccagaggagcctgggctgccttgtgcatcctgaggcgtcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgatgaccaggtgtgcccagaggagcctgggctgccttgtgcatcctgaggcgtcagg 320
Query: 121 tttcaagttcagacttcactgggaatcaaaaatattctcaagtgcaaggtgagcctcctc 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 321 tttcaagttcagacttcactgggaatcaaaaatattctcaagtgcgaggtgagcctcccc 380
Query: 181 aggatgagtgctgtataaagcacacaacacagaaagaaggacttatcaaaaaagacaaac 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaggagtgctgtataaagcacacaacacagaaagaaggacttatcaaaaaagacaaac 440
Query: 241 aaacaaacacctgacaggagtagtcctcccacaaaaatgcaaaccctcaaacaaatcata 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 aaacaaacacctgacaggagtagtcctcccacaaaaatgcaaaccctcaaacaaattata 500
Query: 301 gccacgtgcagttccttcacacggcgcccagtgagatctgtttaaatcaagtctgatttt 360
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 501 gccacgtgcagttccttcacatggcgcccagtgagatctgtttaaatcaaatctgatttt 560
Query: 361 tttttaaatgattgaattacaaccaatctaaacattaaagcaaccaccaaactaaactga 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttt-aaatgattgaattacaaccaatctaaacattaaagcaaccaccaaactaaactga 619
Query: 421 aacagaattggtttcttatttgctttaaatattagctgtgt-tttttttttctggaaact 479
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 aacagaatcggtttcttatttgctttaaatattagctgtgtatttttttttctggaaact 679
Query: 480 catttacaattcaagattttactgaccagtagcaggttctgggcacagtctaagattcct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catttacaattcaagattttactgaccagtagcaggttctgggcacagtctaagattcct 739
Query: 540 aggtgagaaattc 552
|||||||||||||
Sbjct: 740 aggtgagaaattc 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
