BAC Information

Click to search

BAC

Clone NameMSMg01-518P06
Chromosome8 (Build37)
Map Location 70,344,799 - 70,436,319
singlet/doubletdoublet
Overlap genePsd3
Upstream geneBC053440, LOC665453, Nat1, Nat2, LOC100041265, Nat3
Downstream geneSh2d4a, LOC665510, 4732435N03Rik, Ints10, Lpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518P06.T7 (MSMg01no518_p06.b1)MSMg01-518P06.TJ (MSMg01no518_p06.g1)
ACCAG590340AG590341
length733754
length of high quality
(start - end)		682 (52 - 733)571 (84 - 654)
definitionCHROMAT_FILE: MSMg01no518_p06.b1 PHD_FILE: MSMg01no518_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:31 2005CHROMAT_FILE: MSMg01no518_p06.g1 PHD_FILE: MSMg01no518_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,435,642 - 70,436,319)(70,344,799 - 70,345,369)
sequence
TTTTTAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAGTCCTCATAGAAATATAAACAACAAATCACTCAGAACT
GCCATCCACCCTCAATAATACCACCTCTAGTAATACTGTTCACCTGAGAC
AGTCTAACACTGGTTGGGCACTCACTGTTTGGTAGTCACTCAGCTAAGTG
CTGCATACATGCCGTTCACTCAAGCAAGAGTCTTAGGAAAGGGGCCTAGG
GGAACGTGTTTTATATGTAGGGAAGCTTGGGCTCTAGGACCCGTGAAGAT
GCTGTGTATCATAAGCGGTCGCTACTGCTAGCCATCTGGTGATATACATG
TCCTCACTGATTCAAGAAAATATTTACCAAGTTTCTTATGATAGACAGGT
AATGGTTCAGTTACTTGGAATATTTAACAAAATACAACCAAAGATAAACA
TGTGTCTTGAGGATGTACTCTATAGATTCAAAGTTCTCAAATAAGGTAGA
AAATATCTCTAAGAGTTGTTTCCTGCTTGTGTTGGGGCTTGTGTATCTTA
CCCTGGGATAAGAGTTTTTGTCTTGAGTAGGAGTTGGGTAAAGTAGTCAT
AATTCTAGTGGTGGTCGTCTGACTAGGAGAGAACAACAAAAATGTATGGA
AAAAGGTTCCCACTTGTACCCAGAGGGCATTAGAGAAGACCCAGTTCATT
GTAGGCAACTGAAAGTCTTGAGCAAACAACAGA

NNNNCCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGATTTGCTTACAA
GAAAGCATGCAGTTGAAGCCCTTTTCCCATTCTGTTGCTTAGACTTTCTA
CTCAGAAACAAGAACTACTACATGTTTTGCATGTATCTCTTTTCAGAGTA
AATCCATACAAATATAATATATATGTATATATACATATTTATTATATATT
ATATATACATTTACTTATTATGGGAAATACATGGAAACATAGATATTATT
GCTATTTATTTAATAGCATATAAGGCTATCTAATTCATTATTAATTGCAT
AATATTACATTATATGAATATATTATGTTTCACTGGTACCACATTATTGG
ACATTGAGTTTACTGTCATTTGCTACAATAAATTTAGAAAATGTGTTCAG
AAAATATAGATGTAATATATCATATTTAAATAACATGGCTTTCTAAACAA
ACTGTATTTTTGTTCTATACTTCCTTTCTACTGCCCACTGTCTTGATATG
GCTATATATGGTTTACAACTAGATGTAATATGAAAGAATCAGTTCAAAGA
CATATCACATGGCCCTGTTCTGCAGTAGCCTACTCTGAGGCCTTGCCTGT
TCTAGACATTAGCTGGCCTATGCAGACAGATTGCTTTCAATAAAATAAAG
GCAAGCCACCTAGAGAGCAGCAGCTGTTTAACAGCNAAAAATAACTTTCT
ATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_p06.b1 MSMg01no518_p06.b1 CHROMAT_FILE:
MSMg01no518_p06.b1 PHD_FILE: MSMg01no518_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:31 2005
         (682 letters)



>mm_chr8_70435281_70436362
          Length = 1082

 Score = 1280 bits (662), Expect = 0.0
 Identities = 674/678 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcagtcctcatagaaatataaacaacaaatcactcagaactgccatccaccctcaa 64
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 gaattcagtcctcatagaaatataaacaacaaatcactcagaactgccatccaccctcaa 980

                                                                        
Query: 65   taataccacctctagtaatactgttcacctgagacagtctaacactggttgggcactcac 124
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  taataacacctctagtaatactgttcacctgagacagtctaacactggttgggcactcac 920

                                                                        
Query: 125  tgtttggtagtcactcagctaagtgctgcatacatgccgttcactcaagcaagagtctta 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  tgtttggtagtcactcagctaagtgctgcatacatgccgttcactcaagcaagagtctta 860

                                                                        
Query: 185  ggaaaggggcctaggggaacgtgttttatatgtagggaagcttgggctctaggacccgtg 244
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 859  ggaaaggggcctaggggaatgtgttttatatgtagggaagcttgggctctaggacccgtg 800

                                                                        
Query: 245  aagatgctgtgtatcataagcggtcgctactgctagccatctggtgatatacatgtcctc 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  aagatgctgtgtatcataagcggtcgctactgctagccatctggtgatatacatgtcctc 740

                                                                        
Query: 305  actgattcaagaaaatatttaccaagtttcttatgatagacaggtaatggttcagttact 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  actgattcaagaaaatatttaccaagtttcttatgatagacaggtaatggttcagttact 680

                                                                        
Query: 365  tggaatatttaacaaaatacaaccaaagataaacatgtgtcttgaggatgtactctatag 424
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 679  tggaatatttaacaaaatacaaccaaagataaacatgtgtcttgaggctgtactctatag 620

                                                                        
Query: 425  attcaaagttctcaaataaggtagaaaatatctctaagagttgtttcctgcttgtgttgg 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619  attcaaagttctcaaataaggtagaaaatatctctaagagttgtttcctgcttgtgttgg 560

                                                                        
Query: 485  ggcttgtgtatcttaccctgggataagagtttttgtcttgagtaggagttgggtaaagta 544
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559  ggcttgtggatcttaccctgggataagagtttttgtcttgagtaggagttgggtaaagta 500

                                                                        
Query: 545  gtcataattctagtggtggtcgtctgactaggagagaacaacaaaaatgtatggaaaaag 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499  gtcataattctagtggtggtcgtctgactaggagagaacaacaaaaatgtatggaaaaag 440

                                                                        
Query: 605  gttcccacttgtacccagagggcattagagaagacccagttcattgtaggcaactgaaag 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439  gttcccacttgtacccagagggcattagagaagacccagttcattgtaggcaactgaaag 380

                              
Query: 665  tcttgagcaaacaacaga 682
            ||||||||||||||||||
Sbjct: 379  tcttgagcaaacaacaga 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no518_p06.g1 MSMg01no518_p06.g1 CHROMAT_FILE:
MSMg01no518_p06.g1 PHD_FILE: MSMg01no518_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:31 2005
         (571 letters)



>mm_chr8_70344599_70345569
          Length = 971

 Score = 1096 bits (567), Expect = 0.0
 Identities = 570/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgatttgcttacaagaaagcatgcagttgaagcccttttcccattctgttgcttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgatttgcttacaagaaagcatgcagttgaagcccttttcccattctgttgcttaga 260

                                                                       
Query: 61  ctttctactcagaaacaagaactactacatgttttgcatgtatctcttttcagagtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttctactcagaaacaagaactactacatgttttgcatgtatctcttttcagagtaaat 320

                                                                       
Query: 121 ccatacaaatataatatatatgtatatatacatatttattatatattatatatacattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatacaaatataatatatatgtatatatacatatttattatatattatatatacattta 380

                                                                       
Query: 181 cttattatgggaaatacatggaaacatagatattattgctatttatttaatagcatataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttattatgggaaatacatggaaacatagatattattgctatttatttaatagcatataa 440

                                                                       
Query: 241 ggctatctaattcattattaattgcataatattacattatatgaatatattatgtttcac 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 ggctatctaattcattattaattgcatgatattacattatatgaatatattatgtttcac 500

                                                                       
Query: 301 tggtaccacattattggacattgagtttactgtcatttgctacaataaatttagaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtaccacattattggacattgagtttactgtcatttgctacaataaatttagaaaatg 560

                                                                       
Query: 361 tgttcagaaaatatagatgtaatatatcatatttaaataacatggctttctaaacaaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttcagaaaatatagatgtaatatatcatatttaaataacatggctttctaaacaaact 620

                                                                       
Query: 421 gtatttttgttctatacttcctttctactgcccactgtcttgatatggctatatatggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatttttgttctatacttcctttctactgcccactgtcttgatatggctatatatggtt 680

                                                                       
Query: 481 tacaactagatgtaatatgaaagaatcagttcaaagacatatcacatggccctgttctgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacaactagatgtaatatgaaagaatcagttcaaagacatatcacatggccctgttctgc 740

                                          
Query: 541 agtagcctactctgaggccttgcctgttcta 571
           |||||||||||||||||||||||||||||||
Sbjct: 741 agtagcctactctgaggccttgcctgttcta 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |