BAC Information

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BAC

Clone NameMSMg01-519E14
Chromosome8 (Build37)
Map Location 94,736,596 - 94,737,269
singlet/doubletsinglet
Overlap genenone
Upstream geneRpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream gene4933436C20Rik, Irx5, Irx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519E14.T7 (MSMg01no519_e14.b1)MSMg01-519E14.TJ (MSMg01no519_e14.g1)
ACCAG590596AG590597
length754746
length of high quality
(start - end)
83 (37 - 119)674 (73 - 746)
definitionCHROMAT_FILE: MSMg01no519_e14.b1 PHD_FILE: MSMg01no519_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:57 2005CHROMAT_FILE: MSMg01no519_e14.g1 PHD_FILE: MSMg01no519_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGGGCGGTAAXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGC
TTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCGGTGGCTCGCTG
TCTTTAATTCTTGGCGTCTGTCTTGCTTTTGAGGTAAATTCGAAGGCATT
GAATTCAAGTCCGTGATTTTGGAAAAGAAACGGGTTTCTTAGTAATCGCC
TCAGCCCCCTCTTCTTACTTCTGTAACTATGTCAGTGAACAAAGGAAATG
AGTCTCTCCCCTGTAGGGACCCCATTCAACAGAAAAAGTGCAGATGGTAA
ATGATGAACACCCAGTCATACTTTATACATGCGTAATGATGGGAAGAATA
TAATGCACAAAGGTCATCAAGTGCACAGCGGAATTGGTTACCAGGCTGAA
GATTACGGGGGATATGGACACGACGGAGACATTCTGTAAGCGAGCTGATA
GGTGTAGGGGAGGTGGTAGAGCGCGTGCAGGTTTATAAGGTATGAAAAAT
TACTCGGTGTGATATTTAAGTTTCCCGCATGGTCAGTGTGTATTCGGTTA
TGCGCGCCTGGGGAAAGGAGGGTATACGAAGAGCTTTGGCAGGATGANGC
ACTTTTGGGGATTGGTAAGAGCGAGGTCGTACAGAAAGCGTTATAAACTC
AAAGATAGGGAGAAGCTGATTCGGTGGTAGGCCCGAATTTTTATTTGGCG
ATAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCCAATTAAGACATAAATATTTTTTCCAGAGG
CTAAACTCGCTGCAAAATAATAATCCCCCCTCAACGCATCTTTACATGTC
TTCGGCAAAACACCTGTCTAGAACTGTTAACACTAAATATTTGGGGAGCT
CTGGACTTCAAAGACGTCCCTGCAAACGTCAGGCGTTGTTAAAGTGTTGA
AGTAATTTTGGTTAAATGCTTCTGTGACAACTGTCGGACTTGATTTGTTT
TAGCTGAATACATTTGGAACATTGCTTCGAATTCTGTGAGTTGGTCATTT
GCCAAGAGATGAGAATTGGGCCAAAGTCTAAAGAATTACATGCATCAAAG
AACTTGGGTGGGGGGTGGGGGGCCCAGGAGGTGAACGGAAGGACTCTTTG
GGTATTTTAAAAATGCCATTTATCTTGTAGGTTACAAACTTCAAAAGACC
ATTCATTCTTACAGGTTGATGGCACTTACAGTAAAATTGCAAAATTGTGC
AGAAGAAGTCATTCTGATTCATGGCCAAATCCATCTGGATGGAGTCACAC
CTCAAATTCCTCTCAGACGGATGGAAGAAAATAGTACGAAGCACACGGAT
AGCACGAGTGCTATAGGAGCTAGAGAGATGGAGCCCGGCAATTAAGAGCC
TCTGCTGTTCTTGCTCAGGATGGTTCCTGGCATCCATATCAGATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_e14.g1 MSMg01no519_e14.g1 CHROMAT_FILE:
MSMg01no519_e14.g1 PHD_FILE: MSMg01no519_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:57 2005
         (674 letters)



>mm_chr8_94736396_94737469
          Length = 1074

 Score = 1303 bits (674), Expect = 0.0
 Identities = 674/674 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagacataaatattttttccagaggctaaactcgctgcaaaataataatcccccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaagacataaatattttttccagaggctaaactcgctgcaaaataataatcccccctc 260

                                                                       
Query: 61  aacgcatctttacatgtcttcggcaaaacacctgtctagaactgttaacactaaatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgcatctttacatgtcttcggcaaaacacctgtctagaactgttaacactaaatattt 320

                                                                       
Query: 121 ggggagctctggacttcaaagacgtccctgcaaacgtcaggcgttgttaaagtgttgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagctctggacttcaaagacgtccctgcaaacgtcaggcgttgttaaagtgttgaag 380

                                                                       
Query: 181 taattttggttaaatgcttctgtgacaactgtcggacttgatttgttttagctgaataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taattttggttaaatgcttctgtgacaactgtcggacttgatttgttttagctgaataca 440

                                                                       
Query: 241 tttggaacattgcttcgaattctgtgagttggtcatttgccaagagatgagaattgggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttggaacattgcttcgaattctgtgagttggtcatttgccaagagatgagaattgggcc 500

                                                                       
Query: 301 aaagtctaaagaattacatgcatcaaagaacttgggtggggggtggggggcccaggaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtctaaagaattacatgcatcaaagaacttgggtggggggtggggggcccaggaggt 560

                                                                       
Query: 361 gaacggaaggactctttgggtattttaaaaatgccatttatcttgtaggttacaaacttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacggaaggactctttgggtattttaaaaatgccatttatcttgtaggttacaaacttc 620

                                                                       
Query: 421 aaaagaccattcattcttacaggttgatggcacttacagtaaaattgcaaaattgtgcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaagaccattcattcttacaggttgatggcacttacagtaaaattgcaaaattgtgcag 680

                                                                       
Query: 481 aagaagtcattctgattcatggccaaatccatctggatggagtcacacctcaaattcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagaagtcattctgattcatggccaaatccatctggatggagtcacacctcaaattcctc 740

                                                                       
Query: 541 tcagacggatggaagaaaatagtacgaagcacacggatagcacgagtgctataggagcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagacggatggaagaaaatagtacgaagcacacggatagcacgagtgctataggagcta 800

                                                                       
Query: 601 gagagatggagcccggcaattaagagcctctgctgttcttgctcaggatggttcctggca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagagatggagcccggcaattaagagcctctgctgttcttgctcaggatggttcctggca 860

                         
Query: 661 tccatatcagatgg 674
           ||||||||||||||
Sbjct: 861 tccatatcagatgg 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)