Query= MSMg01no519_j21.b1 MSMg01no519_j21.b1 CHROMAT_FILE:
MSMg01no519_j21.b1 PHD_FILE: MSMg01no519_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:23 2005
(674 letters)
>mm_chr8_109130323_109131396
Length = 1074
Score = 617 bits (319), Expect = 0.0
Identities = 331/335 (98%), Gaps = 1/335 (0%)
Strand = Plus / Minus
Query: 340 cagcctgagctacctgggaccctgtctcaaaaaaacaaaaacaagaaatagaaaccgaag 399
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 cagcctgaactacctgggaccctgtctcaaaaaaacaaaaacaagaaatagaaaccgaag 1015
Query: 400 agccacagctggtgtgtctgcccagcactcaggaagcagaagcagaaagatctctgtgaa 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 agccacagctggtgtgtctgcccagcactcaggaagcagaagcagaaagatctctgtgaa 955
Query: 460 atcaagggcagcctggtctacaacagtgaagtccaacccagctaaggctacatagtgaga 519
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 954 atcaagggcagcctggtctacaacagtgaagtccagcccagctaaggcta-atagtgaga 896
Query: 520 tcctatctcaaaaacaaacaacaaaaacccaaaacagaaaaaataaacaaatcaacctaa 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 tcctatctcaaaaacaaacaacaaaaacccaaaacagaaaaaataaacaaatcaacctaa 836
Query: 580 ctaaaggatatgcttggatagtggaggggtttgggttttcagtttttaagattctgcatt 639
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ctaaaggatatgcttgggtagtggaggggtttgggttttcagtttttaagattctgcatt 776
Query: 640 ttagaagccagagattctacaggcaagcttacagg 674
|||||||||||||||||||||||||||||||||||
Sbjct: 775 ttagaagccagagattctacaggcaagcttacagg 741
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_j21.g1 MSMg01no519_j21.g1 CHROMAT_FILE:
MSMg01no519_j21.g1 PHD_FILE: MSMg01no519_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:23 2005
(577 letters)
>mm_chr8_108948171_108949147
Length = 977
Score = 1108 bits (573), Expect = 0.0
Identities = 576/577 (99%)
Strand = Plus / Plus
Query: 1 acactggggaaaaaccctttgagtgtaatgtgtgtggaaaggccttcaggcacagctcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactggggaaaaaccctttgagtgtaatgtgtgtggaaaggccttcaggcacagctcgt 260
Query: 61 cccttggtcagcatgaaaacgcacatacaggagagaagccctatcagtgtagcctctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccttggtcagcatgaaaacgcacatacaggagagaagccctatcagtgtagcctctgtg 320
Query: 121 ggaaagccttccagcgcagttcatctcttgttcaacaccagagaatccacacgggagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaagccttccagcgcagttcatctcttgttcaacaccagagaatccacacgggagaga 380
Query: 181 agccctatcgctgcaatctctgtgggaggtcattcaggcacagcacgtccctcacgcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccctatcgctgcaatctctgtgggaggtcattcaggcacagcacgtccctcacgcaac 440
Query: 241 atgaggtgacccacagtggggagaaacccttccagtgtaaggaatgtgggaaggccttta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaggtgacccacagtggggagaaacccttccagtgtaaggaatgtgggaaggccttta 500
Query: 301 gcaggtgttcttcccttgtccagcatgagaggacccatacaggagagaagcctttcgagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggtgttcttcccttgtccagcatgagaggacccatacaggagagaagcctttcgagt 560
Query: 361 gcagcatttgtgggagggcgtttggtcagagcccatccctttataaacatatgaggattc 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagcatttgtgggagggcatttggtcagagcccatccctttataaacatatgaggattc 620
Query: 421 ataaaagaagcaaaccttaccaaagtaacaacttcagcctggcttttgtgcctaacactc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaaagaagcaaaccttaccaaagtaacaacttcagcctggcttttgtgcctaacactc 680
Query: 481 ctcttcctcaaggtgaaggcctgcttactgaagtaaagtcgtaccattgtaatgactgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttcctcaaggtgaaggcctgcttactgaagtaaagtcgtaccattgtaatgactgtg 740
Query: 541 ggaaagacttcggtcacattacagacttctctgagca 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaaagacttcggtcacattacagacttctctgagca 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
