Query= MSMg01no519_m11.b1 MSMg01no519_m11.b1 CHROMAT_FILE:
MSMg01no519_m11.b1 PHD_FILE: MSMg01no519_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:36 2005
(304 letters)
>mm_chr8_10513661_10514363
Length = 703
Score = 542 bits (280), Expect = e-158
Identities = 295/300 (98%), Gaps = 1/300 (0%)
Strand = Plus / Minus
Query: 5 gaattcataaatgtctgtgtggttacaatgtgtccagaaatctcagataatggataagga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 gaattcataaatgtctgtgtggttacaatgtgtccagaaatctcagataatggatcagga 444
Query: 65 tattcgtttcaaagtgggaatattgctaaataaactgcagacacaacaagaccattggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tattcgtttcaaagtgggaatattgctaaataaactgcagacacaacaagaccattggga 384
Query: 125 cctacaacatctaatggacagttctatggggggaatagtcagaacgaaagtaaactttta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 383 cctacaacatctaatggacagttctatggggggaatagtcagaacgaaagtaaacattta 324
Query: 185 aaactatttagtcactaataaacatgccaccattagtacattcatatgacgtatcaataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaactatttagtcactaataaacatgccaccattagtacattcatatgacgtatcaataa 264
Query: 245 gtattatgtttcaaattacaagctacagagctccacaagtaaaccgcacagagaattaca 304
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 263 atattatgtttcaaat-acaagctacagagctccacaagtaaactgcacagagaattaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 703
Length adjustment: 9
Effective length of query: 295
Effective length of database: 694
Effective search space: 204730
Effective search space used: 204730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_m11.g1 MSMg01no519_m11.g1 CHROMAT_FILE:
MSMg01no519_m11.g1 PHD_FILE: MSMg01no519_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:36 2005
(537 letters)
>mm_chr8_10378246_10379182
Length = 937
Score = 938 bits (485), Expect = 0.0
Identities = 523/537 (97%), Gaps = 3/537 (0%)
Strand = Plus / Plus
Query: 1 caaccctctggaataatctatccagctattccttgagttccagtaaactgggtgctgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccctctggaataatctatccagctattccttgagttccagtaaactgggtgctgttc 260
Query: 61 cttaacacaattcttgatgatttaaataaattatttattcctctacttcttcctcctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaacacaattcttgatgatttaaataaattatttattcctctacttcttcctcctttg 320
Query: 121 ccctctttcctgcttcctttgcccacttccatgcctcttcctcctcctcctcctcctcct 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 321 ccctctttcctgcttcctttgcccacttccctgcctcttcctcctcctcctcctcttcct 380
Query: 181 ctacctcctcctccaccttcttacttcctccatcacactattaataaagaccaaaaccaa 240
|| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ct---tccttctccacctccttacttcctccatcacactattaataaagaccaaaaccaa 437
Query: 241 gctctcccaaacattgagcaaatgtgccattgagtcaaacctcaacacagcaggtataac 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctcttccaaacattgagcaaatgtgccattgagtcaaacctcaacacagcaggtataac 497
Query: 301 cttgaagctttgctgacatacagtttattatgaaatccaatcctctagctgcctgtagag 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 cttgaagctttgctgacatacagtttattatgaaatccaattctctagctgcctgtagag 557
Query: 361 accctgagctttaggaagacaaaggaaacatttgaaaaccctcaaagtggtagtgggaaa 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 558 accctgagctttaggaagacaaaggaagcatttgaaaaccctcaaagtggtagtgggaaa 617
Query: 421 gcaaatgggaattggaatatgcatatctttctctgctctggtcaatcagtcatgagctgg 480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 gcaaatgggaattggaatatgcatatctttctctgctctggtcaggcagtcatgagctgg 677
Query: 481 ccacagatattcccttaaggtcatcgtgtcttatctgagacagagtggggtgcattc 537
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 678 ccacagttattcccttaaggtcatcgtgtcttatctgagacagagtggggtacattc 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
