Query= MSMg01no520_a17.b1 MSMg01no520_a17.b1 CHROMAT_FILE:
MSMg01no520_a17.b1 PHD_FILE: MSMg01no520_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:57 2005
(708 letters)
>mm_chr8_115083640_115084746
Length = 1107
Score = 1272 bits (658), Expect = 0.0
Identities = 694/706 (98%), Gaps = 4/706 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgttttggca-agtagctgtgttcccttcttcttaaatcacttcactataaa 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctttgttttgg-atagtagctgtgttcccttcttcttaaatcacttcactataaa 262
Query: 64 gacatcaccagtctaagtgtgatattttctaatgccgtgcattcctactgggataagctt 123
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 263 gacatcaccagtctaagtgtgatattttctaacgctgtgcattcctactgggataagctt 322
Query: 124 tttctatcagagaagtaaaactcaatgctgtattctaagatttcaccgagacaaaacagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttctatcagagaagtaaaactcaatgctgtattctaagatttcaccgagacaaaacagg 382
Query: 184 aggtgaaaaacaccctctctccgtaaccatccccttcttcgtgctccctttctccaacta 243
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct: 383 aggtgaaaaacaccctctctccataaccatccccttcttcatgctccctttccccaacta 442
Query: 244 cactctatttcttttaaaagatttatctttttattgatgtatacgtgtgagtgtaggatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cactctatttcttttaaaagatttatctttttattgatgtatacgtgtgagtgtaggatt 502
Query: 304 gtgtatgctgtgagagcagaagagggcattgagttccctgaagctggggctacagtcagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgtatgctgtgagagcagaagagggcattgagttccctgaagctggggctacagtcagt 562
Query: 364 tataaaccatcatcctacatgagtgctagcaccaaacccaggtcctctatgctcagtatg 423
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 563 tataaaccatcatcctacatgggtgctagcaccaaacccaggtcctctatgctcagtatt 622
Query: 424 cactcttagcactgccccccc-tccttttatgttgtttttcttcttccatcaagccatcc 482
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cactcttagcactgcccccccctccttttatgttgtttttcttcttccatcaagccatcc 682
Query: 483 cgaatcaggtaatttcttccctgccatacatcttggtcagtcccatgcaaagtggccaaa 542
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cgaatcaggtaatttctcccctgccatacatcttggtcagtcccatgcaaagtggccaaa 742
Query: 543 ttcgtgatgttcagatgagggggatctagactgacctctcttattcagtatacttgggtt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttcgtgatgttcagatgagggggatctagactgacctctcttattcagtatacttgggtt 802
Query: 603 ttaagcacggttaaggagttctgtgctttgtcttatgctaaataaacgtaaaacagcttt 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttaagcacggttaaggagttctgtgctttgtcttatgctaaataaacgtaaaacagctt- 861
Query: 663 gggggaacgataaggtttattttcttattctagaaatagcaccccg 708
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 gggggaacgataaggtttattttcttattctagaaatagcaccccg 907
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 708
Length of database: 1107
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1097
Effective search space: 765706
Effective search space used: 765706
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no520_a17.g1 MSMg01no520_a17.g1 CHROMAT_FILE:
MSMg01no520_a17.g1 PHD_FILE: MSMg01no520_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:58 2005
(687 letters)
>mm_chr8_115273895_115274980
Length = 1086
Score = 1313 bits (679), Expect = 0.0
Identities = 685/687 (99%), Gaps = 1/687 (0%)
Strand = Plus / Minus
Query: 1 attcacatgaataaacatcacattccttagaaagaataatgctagccgaacaatcattcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 attcacatgaataaacatcacattccttagaaagaataatgctagccgaacaatcattcc 827
Query: 61 ttgttatatagttgaatgaatgtgcgtggctaaaacgtaactctttgtcaaacacaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ttgttatatagttgaatgaatgtgcgtggctaaaacgtaactctttgtcaaacacaaatg 767
Query: 121 atgttttctaccattactagatggcaataaattaagaaaaatttcagccagatagacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 atgttttctaccattactagatggcaataaattaagaaaaatttcagccagatagacttt 707
Query: 181 aaatgctgacacatttggagcaatgcagttatctctgacttaatgtattgcttagaggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaatgctgacacatttggagcaatgcagttatctctgacttaatgtattgcttagaggca 647
Query: 241 actatcagagtaatgattttattttagataaagactatttttggaattagctaccaagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 actatcagagtaatgattttattttagataaagactatttttggaattagctaccaagag 587
Query: 301 attttttcccccataaaaaccatccatgttactttagcctactatttctttctctctctc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 a-tttttcccccataaaaaccatccatgttactttagcctactatttctttctctctctc 528
Query: 361 tctttttcactattgttattattacattataatggttgtatccatcttccatggcacctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tctttttcactattgttattattacattataatggttgtatccatcttccatggcacctc 468
Query: 421 aagctttggggcctggaatacttccatcagcaaaataaggtagtggaaaaaaagaaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aagctttggggcctggaatacttccatcagcaaaataaggtagtggaaaaaaagaaagaa 408
Query: 481 agaaatcttggacaattgatgcctaaagcaatggggcaatgttttatccctcaactaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agaaatcttggacaattgatgcctaaagcaatggggcaatgttttatccctcaactaaag 348
Query: 541 ccactttccatcctctctgccctttacctgctttcaacctaacaagtgtatggctatgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccactttccatcctctctgccctttacctgctttcaacctaacaagtgtatggctatgca 288
Query: 601 tatcaatgaagtcatttactataaacatacttagtctaccatgtctgaggtactgcatgc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tatcaatgaagtcatttactataaacatacttagtctaccatgtctgaggtactgcatgc 228
Query: 661 tatatgctgggtagaaagtgttgaaga 687
||||||||||||||||||| |||||||
Sbjct: 227 tatatgctgggtagaaagtattgaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1086
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1076
Effective search space: 728452
Effective search space used: 728452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
