Query= MSMg01no520_d22.b1 MSMg01no520_d22.b1 CHROMAT_FILE:
MSMg01no520_d22.b1 PHD_FILE: MSMg01no520_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:14 2005
(574 letters)
>mm_chr8_26387773_26388746
Length = 974
Score = 1006 bits (520), Expect = 0.0
Identities = 552/570 (96%), Gaps = 12/570 (2%)
Strand = Plus / Minus
Query: 5 gaattcagtaacaagataatgtgtatgtgcatgtgtgcatgtgcatgtgtctgggtgtgt 64
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 870 gaattcagtaacaagataatgtgtatgtgcatgtgtgcatgtgca------------tgt 823
Query: 65 gtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgcatgtgtgtattacagctcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgcatgtgtgtattacagctcct 763
Query: 125 actcaaaagagtttatggtgtggtgggtgatagaaagtggaaaggcagaagcaatgtgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 actcaaaagagtttatggtgtggtgggtgatagaaagtggaaaggcagaagcaatgtgtg 703
Query: 185 cagttcagtgtgtgcttagaataaataaggctgtgcgttacatccccagcaccaaacaaa 244
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 702 cagctcagtgtgtgcttagaataaataaggctgtgcgttccatccccagcaccaaacaaa 643
Query: 245 cacagaagtactaggagataccatcaaaccaagtgccataactttatacaaaggttcagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cacagaagtactaggagataccatcaaaccaagtgccataactttatacaaaggttcagc 583
Query: 305 tttgaggaagggatgatttcatgccctgttgtgatttcagctttgcctgtttagacatct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tttgaggaagggatgatttcatgccctgttgtgatttcagctttgcctgtttagacatct 523
Query: 365 ttcaaattaggctacaacagtgtagctgcacagaacggataaccccaccttgcctgcttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttcaaattaggctacaacagtgtagctgcacagaacggataaccccaccttgcctgcttt 463
Query: 425 aacatggtacactatgtcagttgcagcctagatagacgacaaacattcccagtaatgggg 484
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 462 aacatgttacactatgtcagttgcagcctagatagatgacaaacattcccagtaatgggg 403
Query: 485 ttacttcccacccaggccaatgaggggggccaatgggaagacttagtttatctgggacag 544
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 402 ttacttcccgcccaggccaatgaggggggccaatgggaagaattagtttatctgggacag 343
Query: 545 gagagtttgcctggggcattctcttatctt 574
||||||||||||||||||||||||||||||
Sbjct: 342 gagagtttgcctggggcattctcttatctt 313
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_d22.g1 MSMg01no520_d22.g1 CHROMAT_FILE:
MSMg01no520_d22.g1 PHD_FILE: MSMg01no520_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:14 2005
(560 letters)
>mm_chr8_26216085_26217046
Length = 962
Score = 1067 bits (552), Expect = 0.0
Identities = 559/562 (99%), Gaps = 2/562 (0%)
Strand = Plus / Plus
Query: 1 tttcaaaggcccagcacatgcaaacaaaacaccaggaatgcccagggttcagagaaataa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaaaggcccagaacatgcaaacaaaacaccaggaatgcccagggttcagagaaataa 260
Query: 61 aggaagagagggaggaagaaagggagggaagaaggaaggaaagaagcaatcctactagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagagagggaggaagaaagggagggaagaaggaaggaaagaagcaatcctactagaa 320
Query: 121 taaaaaccattacaaagccatatatataatataaaaatagaaatatggatgatttctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaccattacaaagccatatatataatataaaaatagaaatatggatgatttctttc 380
Query: 181 gaattcttaatcatggtcccttttgggcaagcagaggggccttaatggtagatttagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattcttaatcatggtcccttttgggcaagcagaggggccttaatggtagatttagctt 440
Query: 241 ttaagacatatattctgcagtgtttagggttgtgtgtgtgt--tcatctgtgtattggca 298
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 ttaagacatatattctgcagtgtttagggttgtgtgtgtgtgttcatctgtgtattggca 500
Query: 299 cacatgtacataaatgtgtatgtgtctgcacacactctctaaagtgcttgtgtgtggaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatgtacataaatgtgtatgtgtctgcacacactctctaaagtgcttgtgtgtggaga 560
Query: 359 ccagaagttgcttgaatagctctctaatcctgaattaatcctgaatttgctgattcagct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagaagttgcttgaatagctctctaatcctgaattaatcctgaatttgctgattcagct 620
Query: 419 agtctaagtaaacaagcttaccctgggaatcccctgtctatacttctcaagtgctgtgtt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtctaagtaaacaagcttaccctgggaatcccctgtctatacttctcaagtgctgtgtt 680
Query: 479 tatgttcggtcacggtggctacccaggtcctgggtaaattttaggactggagagatggcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgttcggtcacggtggctacccaggtcctgggtaaattttaggactggagagatggcc 740
Query: 539 tagtggttaaaagcactggctg 560
||||||||||||||||||||||
Sbjct: 741 tagtggttaaaagcactggctg 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 962
Length adjustment: 10
Effective length of query: 550
Effective length of database: 952
Effective search space: 523600
Effective search space used: 523600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|