BAC Information

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BAC

Clone NameMSMg01-520D22
Chromosome8 (Build37)
Map Location 26,216,285 - 26,388,642
singlet/doubletdoublet
Overlap geneLOC100042390, Tacc1
Upstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2
Downstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520D22.T7 (MSMg01no520_d22.b1)MSMg01-520D22.TJ (MSMg01no520_d22.g1)
ACCAG591323AG591324
length785769
length of high quality
(start - end)
574 (50 - 623)560 (82 - 641)
definitionCHROMAT_FILE: MSMg01no520_d22.b1 PHD_FILE: MSMg01no520_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:14 2005CHROMAT_FILE: MSMg01no520_d22.g1 PHD_FILE: MSMg01no520_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,388,085 - 26,388,642)(26,216,285 - 26,216,846)
sequence
NNTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTAACAAGATAATGTGTATGTGCATGTGTGCATGTGCATG
TGTCTGGGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTGTCTGTGTGTGTG
TGCATGTGTGTATTACAGCTCCTACTCAAAAGAGTTTATGGTGTGGTGGG
TGATAGAAAGTGGAAAGGCAGAAGCAATGTGTGCAGTTCAGTGTGTGCTT
AGAATAAATAAGGCTGTGCGTTACATCCCCAGCACCAAACAAACACAGAA
GTACTAGGAGATACCATCAAACCAAGTGCCATAACTTTATACAAAGGTTC
AGCTTTGAGGAAGGGATGATTTCATGCCCTGTTGTGATTTCAGCTTTGCC
TGTTTAGACATCTTTCAAATTAGGCTACAACAGTGTAGCTGCACAGAACG
GATAACCCCACCTTGCCTGCTTTAACATGGTACACTATGTCAGTTGCAGC
CTAGATAGACGACAAACATTCCCAGTAATGGGGTTACTTCCCACCCAGGC
CAATGAGGGGGGCCAATGGGAAGACTTAGTTTATCTGGGACAGGAGAGTT
TGCCTGGGGCATTCTCTTATCTTAGCATAGTGTGCCTGTTCCCACTATGT
AAGTGTTCTCATTGTCTAATCCTCGTGTTTGGTTTCTAGACCCCCGGGAT
GGCTTATGAGAAGTGAAGAAGCAACTCAGAAGCTGGATTAAAGATGCCTG
TGTTCATTCAACGGCTTCTTTCTTACAGACTGGGT
TTTTTAGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGGCCCAGCACAT
GCAAACAAAACACCAGGAATGCCCAGGGTTCAGAGAAATAAAGGAAGAGA
GGGAGGAAGAAAGGGAGGGAAGAAGGAAGGAAAGAAGCAATCCTACTAGA
ATAAAAACCATTACAAAGCCATATATATAATATAAAAATAGAAATATGGA
TGATTTCTTTCGAATTCTTAATCATGGTCCCTTTTGGGCAAGCAGAGGGG
CCTTAATGGTAGATTTAGCTTTTAAGACATATATTCTGCAGTGTTTAGGG
TTGTGTGTGTGTTCATCTGTGTATTGGCACACATGTACATAAATGTGTAT
GTGTCTGCACACACTCTCTAAAGTGCTTGTGTGTGGAGACCAGAAGTTGC
TTGAATAGCTCTCTAATCCTGAATTAATCCTGAATTTGCTGATTCAGCTA
GTCTAAGTAAACAAGCTTACCCTGGGAATCCCCTGTCTATACTTCTCAAG
TGCTGTGTTTATGTTCGGTCACGGTGGCTACCCAGGTCCTGGGTAAATTT
TAGGACTGGAGAGATGGCCTAGTGGTTAAAAGCACTGGCTGCTCTTCCAG
AGGACCTGGGTTCAATCCCAAGCACCCACATGGTATCTGAGAACTGTGTA
TAACTTCAGTCCTAAGGGATCCAACAGCCTCACACAGACATATAGGGAGG
CGAAAGAGTATTACACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_d22.b1 MSMg01no520_d22.b1 CHROMAT_FILE:
MSMg01no520_d22.b1 PHD_FILE: MSMg01no520_d22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:14 2005
         (574 letters)



>mm_chr8_26387773_26388746
          Length = 974

 Score = 1006 bits (520), Expect = 0.0
 Identities = 552/570 (96%), Gaps = 12/570 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtaacaagataatgtgtatgtgcatgtgtgcatgtgcatgtgtctgggtgtgt 64
           |||||||||||||||||||||||||||||||||||||||||||||            |||
Sbjct: 870 gaattcagtaacaagataatgtgtatgtgcatgtgtgcatgtgca------------tgt 823

                                                                       
Query: 65  gtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgcatgtgtgtattacagctcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 gtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgcatgtgtgtattacagctcct 763

                                                                       
Query: 125 actcaaaagagtttatggtgtggtgggtgatagaaagtggaaaggcagaagcaatgtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 actcaaaagagtttatggtgtggtgggtgatagaaagtggaaaggcagaagcaatgtgtg 703

                                                                       
Query: 185 cagttcagtgtgtgcttagaataaataaggctgtgcgttacatccccagcaccaaacaaa 244
           ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 702 cagctcagtgtgtgcttagaataaataaggctgtgcgttccatccccagcaccaaacaaa 643

                                                                       
Query: 245 cacagaagtactaggagataccatcaaaccaagtgccataactttatacaaaggttcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cacagaagtactaggagataccatcaaaccaagtgccataactttatacaaaggttcagc 583

                                                                       
Query: 305 tttgaggaagggatgatttcatgccctgttgtgatttcagctttgcctgtttagacatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tttgaggaagggatgatttcatgccctgttgtgatttcagctttgcctgtttagacatct 523

                                                                       
Query: 365 ttcaaattaggctacaacagtgtagctgcacagaacggataaccccaccttgcctgcttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttcaaattaggctacaacagtgtagctgcacagaacggataaccccaccttgcctgcttt 463

                                                                       
Query: 425 aacatggtacactatgtcagttgcagcctagatagacgacaaacattcccagtaatgggg 484
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 462 aacatgttacactatgtcagttgcagcctagatagatgacaaacattcccagtaatgggg 403

                                                                       
Query: 485 ttacttcccacccaggccaatgaggggggccaatgggaagacttagtttatctgggacag 544
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 402 ttacttcccgcccaggccaatgaggggggccaatgggaagaattagtttatctgggacag 343

                                         
Query: 545 gagagtttgcctggggcattctcttatctt 574
           ||||||||||||||||||||||||||||||
Sbjct: 342 gagagtttgcctggggcattctcttatctt 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no520_d22.g1 MSMg01no520_d22.g1 CHROMAT_FILE:
MSMg01no520_d22.g1 PHD_FILE: MSMg01no520_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:14 2005
         (560 letters)



>mm_chr8_26216085_26217046
          Length = 962

 Score = 1067 bits (552), Expect = 0.0
 Identities = 559/562 (99%), Gaps = 2/562 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcaaaggcccagcacatgcaaacaaaacaccaggaatgcccagggttcagagaaataa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcaaaggcccagaacatgcaaacaaaacaccaggaatgcccagggttcagagaaataa 260

                                                                       
Query: 61  aggaagagagggaggaagaaagggagggaagaaggaaggaaagaagcaatcctactagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaagagagggaggaagaaagggagggaagaaggaaggaaagaagcaatcctactagaa 320

                                                                       
Query: 121 taaaaaccattacaaagccatatatataatataaaaatagaaatatggatgatttctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaccattacaaagccatatatataatataaaaatagaaatatggatgatttctttc 380

                                                                       
Query: 181 gaattcttaatcatggtcccttttgggcaagcagaggggccttaatggtagatttagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaattcttaatcatggtcccttttgggcaagcagaggggccttaatggtagatttagctt 440

                                                                       
Query: 241 ttaagacatatattctgcagtgtttagggttgtgtgtgtgt--tcatctgtgtattggca 298
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 441 ttaagacatatattctgcagtgtttagggttgtgtgtgtgtgttcatctgtgtattggca 500

                                                                       
Query: 299 cacatgtacataaatgtgtatgtgtctgcacacactctctaaagtgcttgtgtgtggaga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatgtacataaatgtgtatgtgtctgcacacactctctaaagtgcttgtgtgtggaga 560

                                                                       
Query: 359 ccagaagttgcttgaatagctctctaatcctgaattaatcctgaatttgctgattcagct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagaagttgcttgaatagctctctaatcctgaattaatcctgaatttgctgattcagct 620

                                                                       
Query: 419 agtctaagtaaacaagcttaccctgggaatcccctgtctatacttctcaagtgctgtgtt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtctaagtaaacaagcttaccctgggaatcccctgtctatacttctcaagtgctgtgtt 680

                                                                       
Query: 479 tatgttcggtcacggtggctacccaggtcctgggtaaattttaggactggagagatggcc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatgttcggtcacggtggctacccaggtcctgggtaaattttaggactggagagatggcc 740

                                 
Query: 539 tagtggttaaaagcactggctg 560
           ||||||||||||||||||||||
Sbjct: 741 tagtggttaaaagcactggctg 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 962
Length adjustment: 10
Effective length of query: 550
Effective length of database: 952
Effective search space:   523600
Effective search space used:   523600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)