Query= MSMg01no520_f21.b1 MSMg01no520_f21.b1 CHROMAT_FILE:
MSMg01no520_f21.b1 PHD_FILE: MSMg01no520_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:24 2005
(660 letters)
>mm_chr8_53556730_53557789
Length = 1060
Score = 1230 bits (636), Expect = 0.0
Identities = 651/656 (99%)
Strand = Plus / Minus
Query: 5 gaattctttattgcagatgtgtttgccctttggaaagaaaataatataatttctgtctcc 64
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 860 gaattctttattgcagatgtgtttgccctttggaaagaaaataatatcatttctgtctcc 801
Query: 65 aaataatgtttagaaagtaaacaatgataacattaggttaacacacgttactagttatca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aaataatgtttagaaagtaaacaatgataacattaggttaacacacgttactagttatca 741
Query: 125 taaggtgatttattaaggaatgtgttcataagtactataaattattaattcaataacatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaggtgatttattaaggaatgtgttcataagtactataaattattaattcaataacatt 681
Query: 185 atattctcagttaataagtaatctatacatttcaggctcctcttctttctcaaatgtcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atattctcagttaataagtaatctatacatttcaggctcctcttctttctcaaatgtcag 621
Query: 245 atttatcctggaaaataatctgaaagttgaatttgctccatagtgtaggagtagcttatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttatcctggaaaataatctgaaagttgaatttgctccatagtgtaggagtagcttatg 561
Query: 305 aatatacctgcttttcagaaaacactgttagtatataagtcttgttagagaatggagcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatatacctgcttttcagaaaacactgttagtatataagtcttgttagagaatggagcca 501
Query: 365 cgtattacgtctttctcttctacttggatgatgccacggtagtagttttcctcttctaag 424
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 cgtattacttctttctcttctacttggatgatgccacggtagcagttttcctcttctaag 441
Query: 425 ctcttcgtggaattggaaaagcagacagtgacatacacaggatggatgaagaaaatcctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcttcgtggaattggaaaagcagacagtgacatacacaggatggatgaagaaaatcctg 381
Query: 485 atatcctggaactttaatcagattggaagtgatttgcttgacttcatatttacattttca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atatcctggaactttaatcagattggaagtgatttgcttgacttcatatttacattttca 321
Query: 545 aatgtgctcctgtattcaacaataatatttcctttgtttatctcccctgtgataacacac 604
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 aatgtgctcctgtattcaacaataagatttcctttgtttatctcccctgtgataacacac 261
Query: 605 aactcatttgaactatggagagaactaccagagagaaacagttgctacctttttaa 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aattcatttgaactatggagagaactaccagagagaaacagttgctacctttttaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_f21.g1 MSMg01no520_f21.g1 CHROMAT_FILE:
MSMg01no520_f21.g1 PHD_FILE: MSMg01no520_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:24 2005
(638 letters)
>mm_chr8_53428630_53429667
Length = 1038
Score = 1064 bits (550), Expect = 0.0
Identities = 607/638 (95%), Gaps = 20/638 (3%)
Strand = Plus / Plus
Query: 1 actctcgcacctgcgtacaaggcttgtttactagttaggcacagcggaggcccgcgccat 60
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 221 actctcgcacctgtgtacaaggcttgtttactagttaggcacagtggaggcccgcgcaat 280
Query: 61 cttataatggcgattgctggcggcacgcacggctctcctcagagattactggcggcacgc 120
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |||| |
Sbjct: 281 cttataatggcgattgctcgcggcacacactgctctcctcagagattactggcagcacac 340
Query: 121 acgcgattgctcgcagcatgtactggctctccacatgcccccatcacagacacacacaca 180
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 341 acgcgattgctcgcagcacgtaccggctctccacatgcccccatcacagacacacacaca 400
Query: 181 cacacacacacacacacacacacacacacacacacacacacttacacacatagacgagtt 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 401 cacacacacacacacacacacacacacacacacacac----ttacacacatagacgagtt 456
Query: 241 ttgagacatatctgaacatgaatcctcagaaacaaagctacatactcctatcacacacac 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 457 ttgagacatatctgaacatgaatcctcagaaacaaagcttcatactcctatcacacacac 516
Query: 301 acatacacacacacacacacacacactcacaacacacacatactcacacaaacatggact 360
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aca----------------cacacactcacaacacacacatactcacacaaacatggact 560
Query: 361 ttaaacacagaaattaaattaaaaaataatcaaggttcatacttgattagaaaactaatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaacacagaaattaaattaaaaaataatcaaggttcatacttgattagaaaactaatt 620
Query: 421 attaattaaacttaaaaacattagttaaaattaaaattaatgttttagggagtgtttagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaattaaacttaaaaacattagttaaaattaaaattaatgttttagggagtgtttagg 680
Query: 481 tacattagtaaaaatctaatattcttagaaaaatgaccacatggctaaagcataaagatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacattagtaaaaatctaatattcttagaaaaatgaccacatggctaaagcataaagatg 740
Query: 541 ttacccaaagcaacagaacagatttagtctgatcttaatattttcacttcaaagacatgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttacccaaagcaacagaacagatttagtctgatcttaatattttcacttcaaagacatgt 800
Query: 601 ttcaacaggcactgtacatatgctcaaaaattgattca 638
||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttcaacaggcactgtacatatgctcaaaaattgattca 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
