Query= MSMg01no520_h10.b1 MSMg01no520_h10.b1 CHROMAT_FILE:
MSMg01no520_h10.b1 PHD_FILE: MSMg01no520_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:31 2005
(587 letters)
>mm_chr8_11524511_11525497
Length = 987
Score = 712 bits (368), Expect = 0.0
Identities = 449/512 (87%), Gaps = 56/512 (10%)
Strand = Plus / Plus
Query: 90 ggatcctggggagcatggcctcctggctcagatccccaaagcaatgaggaggaagccaag 149
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggatcctggggagcacggcctcctggctcagatccccaaagcaatgaggaggaagccaag 349
Query: 150 ccttccaccatggaaggatctggtggtcatctgtaacacagtggccagacgccactactg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ccttccaccatggaaggatctggtggtcatctgtaacacagtggccagacgccactactg 409
Query: 210 agcataacccaggaggagagcatggtgaaggagcagccctcatgacgcaatccatcccac 269
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 410 agcataacccaggaggagggcatggtgacggagcagccctcatgacgcaatccatcccac 469
Query: 270 ggaatagaagcatgcctgtgagcgtcaccgtaagcattactgtgagcatcagtaagatac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggaatagaagcatgcctgtgagcgtcaccgtaagcattactgtgagcatcagtaagatac 529
Query: 330 atacaggagagacagtgaaatgactcagcaaagagagagaggaaaacccaggcacagggt 389
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 530 atacaggagagacagtgaaatgactcagcaaagagagagaggaaaagccaggcacagggt 589
Query: 390 gtctaacaaaacaactactcataactccagttccgggatctctggcaccatctttcaagg 449
||||||||||||||||||||||||||||
Sbjct: 590 gtctaacaaaacaactactcataactcc-------------------------------- 617
Query: 450 atatttgcccctcacatgcatgcatctctcccccctacacacacacacacacacacaca- 508
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ----------ctcacatgcatgcatctctcccccctacacacacacacacacacacacac 667
Query: 509 -------------tgcacaaatgcatacagaatataaaacaggagctgaggatctgcata 555
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 acacacacacacatgcacacatgcatacagaatataaaacaggagctgaggatctgcata 727
Query: 556 gaccataaaagaacgcaagtcagcctgaacgt 587
|||||||||||| ||||| |||||||||||||
Sbjct: 728 gaccataaaagagcgcaaatcagcctgaacgt 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_h10.g1 MSMg01no520_h10.g1 CHROMAT_FILE:
MSMg01no520_h10.g1 PHD_FILE: MSMg01no520_h10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:31 2005
(690 letters)
>mm_chr8_11694206_11695293
Length = 1088
Score = 1237 bits (640), Expect = 0.0
Identities = 677/690 (98%), Gaps = 2/690 (0%)
Strand = Plus / Minus
Query: 1 tatgttggatgtacatgaatgtctgatgacaagtactgggtgagggttagggtttggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tatgttggatgtacatgaatgtctgatgacaagtactgggtgagggttagggtttggtgg 829
Query: 61 catgtgtcccttattttatgtggccctggataagccactgcatgctgctggggtgaggca 120
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 828 cacgtgtccctcattttatgtggccctggataagccactgcatgctgctggggtgaagca 769
Query: 121 ttcatttgcctggtttccagaaacggttttggcatttccatgtttgcacacttagcgtaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 768 ttcatttgcctggtttccagaaacggttttggcatttccatgtttgcacacttagcataa 709
Query: 181 gcctatgagtggccatactttgtgtgtgtgtaaataagtcaggtctcagctgtgcctcgt 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 708 gcctatgagtggccatactttgtgtgcgtgtaaataagtcaggtctcagctgtgcctcgt 649
Query: 241 ggtttgtgcaggacagagggtggctgcttgctcctacaaacaaggtgcagagtcctgcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggtttgtgcaggacagagggtggctgcttgctcctacaaacaaggtgcagagtcctgcct 589
Query: 301 tctgcatttactctctgagtggaacaaattactgctttataaagagtcccagagccaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tctgcatttactctctgagtggaacaaattactgctttataaagagtcccagagccaggc 529
Query: 361 acagcctcagagccactgtcctacagcatcgcctgagctaagcaaccatctctccagatc 420
|||||||||||||||||||||||||||||| |||| || |||||||||||||||| ||
Sbjct: 528 acagcctcagagccactgtcctacagcatcatctgaactcagcaaccatctctcca--tc 471
Query: 421 agggagtccactgtgagtagaggccacaactgtcttcccatgactcagatgacgggattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 470 agggagtccactgtgagtagaggccacaactgtcttcccatgactcagatgacaggattt 411
Query: 481 cagtgaggtgggggttggaggaagctttggggggaacacaggttgagtgtgctataaaaa 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 410 cagtgaggtgggggttggagaaagctttggggggaacacaggttgagtgtgctataaaaa 351
Query: 541 taaaatctggaacttggtagcaactgagaactacagaggagagcctgggctgtgccagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 taaaatctggaacttggtagcaactgagaactacagaggagagcctgggctgtgccagct 291
Query: 601 tacatgtgaccatgagtcttgaaatgatagttgagaatgtaaaattggctcatgaatatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tacatgtgaccatgagtcttgaaatgatagttgagaatgtaaaattggctcatgaatatg 231
Query: 661 cactgctgggaaactatgactctgcaatag 690
||||||||||||||||||||||||||||||
Sbjct: 230 cactgctgggaaactatgactctgcaatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1088
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1078
Effective search space: 733040
Effective search space used: 733040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
