BAC Information

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BAC

Clone NameMSMg01-520K04
Chromosome8 (Build37)
Map Location 94,074,179 - 94,243,865
singlet/doubletdoublet
Overlap geneAJ237917, LOC100041254, LOC674324, LOC100040628
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneIrx3, 4933436C20Rik, Irx5, Irx6, LOC100041325
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520K04.T7 (MSMg01no520_k04.b1)MSMg01-520K04.TJ (MSMg01no520_k04.g1)
ACCAG591621AG591622
length743770
length of high quality
(start - end)		693 (51 - 743)610 (73 - 682)
definitionCHROMAT_FILE: MSMg01no520_k04.b1 PHD_FILE: MSMg01no520_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:44 2005CHROMAT_FILE: MSMg01no520_k04.g1 PHD_FILE: MSMg01no520_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,243,191 - 94,243,865)(94,074,179 - 94,074,788)
sequence
GGGAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGGAT
CCGCGGAATTCTCCCCACTTGTTTTGCTTCTGTGTAAAATTATGCCTTCT
ATAATAAGATCTAAAAATACATTTAGAAACTCGTAACATTCCAAGAAAGC
ATCAGAGAAGGGCTTGAAGTGACGCTGAGGTGTCCTTACGGTGCTGTCTC
AGGTCAGCATTCAGTGGCTCTTCCCTCAGGGGCCTCTGTCTCTTGTCCAC
CACTGACCTTGTGAAAGTTCCAAGGTTGTGTTACTTCAGGTTTGTTAACA
GATCCAGGGATAATTTCTAGGCTGAGATGAAATGTCATCATTCCGTTTTC
TCCCGAGTCACACTCTGCCAAGCCACACTAAGTGTTTCAGCTCCAACAGT
AAACCTCTACAGACATCCCACTAGCAAATGAAGAAGCTACTTGCTTGGAC
AGCACTTCCTTCACTGGTCACAAGTGTAGAGCAAGCATCGGGATAACCAA
ATATCAATAAAAAGCTCAACTTTCTGGGCTGATGCAATGGCTTGATGAGT
AAGGGCATCTGCTGGCAAACCTGATGACCCAGGTTCAATCCCTGGGACCT
ACATGGAATGAGACCACCTCCTCAAGTTCTCCTGTGACCTCCAGGTGTTT
TCGGTAGTACACATTTGCATGCACACACACCCAGGCACACATCAGTCTGC
CAATCAATCACCCAATGGCCAAAGAAAGCTTGGCTTTCTTACT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCCAATCATCCCCAGAGGATGATTTGTACCAATT
CCCAAGATGCAGTTTGAATGTGTTCTTCCTCTGTCATGGAAACAGGATTC
CAAATCTTTATTATTTAAGTTCCATAGAAATGAGTGCCTCAGGGCTGGAG
GGATGGCTCATCGGTTAAGGGCAGTGACTGCTCTTCCAGAGGTCCTGAGT
TCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCT
GATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCGTTTACA
TAAAATAAATAATTTTTAAAAAAGAAAGAAAAGGAAAGAAATGAGTGCCT
CAGTGGGTTGGCCCTTACTCAGCACTGCTACGGTCCATGAACCTTTCGTT
CTCTGTCCTCCCGGCTTTCCTAGCATCTCAGAGGATAAGATAGAATGGAG
TTTTCATTTAGAACTACAGATAAGGCATCAGACTTGATTTTCCAGATAAG
CGCAGATAAATTCCAGGTATATCATAATGAGCCCGCCCCTGCACTCCCAC
TAATCATTTTCTAACAGAGAGCTACAAACAACCCCCAAAATGAAGTTTTG
TGTGCTGGAGTAACTTTCCTGACACTTGTATAGAATGGTTTCCTTGTTGC
TCCATTGTTGCAGTTCTCTTTTATAGATCACCAGGTGCCTGAGCTCAGAG
GCATGGGCAGAGGGATCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_k04.b1 MSMg01no520_k04.b1 CHROMAT_FILE:
MSMg01no520_k04.b1 PHD_FILE: MSMg01no520_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:44 2005
         (693 letters)



>mm_chr8_94243191_94244283
          Length = 1093

 Score = 1305 bits (675), Expect = 0.0
 Identities = 675/675 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattctccccacttgttttgcttctgtgtaaaattatgccttctataataagatctaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggaattctccccacttgttttgcttctgtgtaaaattatgccttctataataagatctaa 616

                                                                       
Query: 65  aaatacatttagaaactcgtaacattccaagaaagcatcagagaagggcttgaagtgacg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaatacatttagaaactcgtaacattccaagaaagcatcagagaagggcttgaagtgacg 556

                                                                       
Query: 125 ctgaggtgtccttacggtgctgtctcaggtcagcattcagtggctcttccctcaggggcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctgaggtgtccttacggtgctgtctcaggtcagcattcagtggctcttccctcaggggcc 496

                                                                       
Query: 185 tctgtctcttgtccaccactgaccttgtgaaagttccaaggttgtgttacttcaggtttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctgtctcttgtccaccactgaccttgtgaaagttccaaggttgtgttacttcaggtttg 436

                                                                       
Query: 245 ttaacagatccagggataatttctaggctgagatgaaatgtcatcattccgttttctccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttaacagatccagggataatttctaggctgagatgaaatgtcatcattccgttttctccc 376

                                                                       
Query: 305 gagtcacactctgccaagccacactaagtgtttcagctccaacagtaaacctctacagac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gagtcacactctgccaagccacactaagtgtttcagctccaacagtaaacctctacagac 316

                                                                       
Query: 365 atcccactagcaaatgaagaagctacttgcttggacagcacttccttcactggtcacaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 atcccactagcaaatgaagaagctacttgcttggacagcacttccttcactggtcacaag 256

                                                                       
Query: 425 tgtagagcaagcatcgggataaccaaatatcaataaaaagctcaactttctgggctgatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtagagcaagcatcgggataaccaaatatcaataaaaagctcaactttctgggctgatg 196

                                                                       
Query: 485 caatggcttgatgagtaagggcatctgctggcaaacctgatgacccaggttcaatccctg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caatggcttgatgagtaagggcatctgctggcaaacctgatgacccaggttcaatccctg 136

                                                                       
Query: 545 ggacctacatggaatgagaccacctcctcaagttctcctgtgacctccaggtgttttcgg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggacctacatggaatgagaccacctcctcaagttctcctgtgacctccaggtgttttcgg 76

                                                                       
Query: 605 tagtacacatttgcatgcacacacacccaggcacacatcagtctgccaatcaatcaccca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  tagtacacatttgcatgcacacacacccaggcacacatcagtctgccaatcaatcaccca 16

                          
Query: 665 atggccaaagaaagc 679
           |||||||||||||||
Sbjct: 15  atggccaaagaaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no520_k04.g1 MSMg01no520_k04.g1 CHROMAT_FILE:
MSMg01no520_k04.g1 PHD_FILE: MSMg01no520_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:44 2005
         (610 letters)



>mm_chr8_94073979_94074988
          Length = 1010

 Score = 1172 bits (606), Expect = 0.0
 Identities = 609/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catccccagaggatgatttgtaccaattcccaagatgcagtttgaatgtgttcttcctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catccccagaggatgatttgtaccaattcccaagatgcagtttgaatgtgttcttcctct 260

                                                                       
Query: 61  gtcatggaaacaggattccaaatctttattatttaagttccatagaaatgagtgcctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcatggaaacaggattccaaatctttattatttaagttccatagaaatgagtgcctcag 320

                                                                       
Query: 121 ggctggagggatggctcatcggttaagggcagtgactgctcttccagaggtcctgagttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctggagggatggctcatcggttaagggcagtgactgctcttccagaggtcctgagttc 380

                                                                       
Query: 181 aattcccagcaaccacatggtggctcacaaccatctgtaatgggatctgatgccctcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcccagcaaccacatggtggctcacaaccatctgtaatgggatctgatgccctcttc 440

                                                                       
Query: 241 tggtgtgtctgaagacagctacagtgtactcgtttacataaaataaataatttttaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgtgtctgaagacagctacagtgtactcgtttacataaaataaataatttttaaaaa 500

                                                                       
Query: 301 agaaagaaaaggaaagaaatgagtgcctcagtgggttggcccttactcagcactgctacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaagaaaaggaaagaaatgagtgcctcagtgggttggcccttactcagcactgctacg 560

                                                                       
Query: 361 gtccatgaacctttcgttctctgtcctcccggctttcctagcatctcagaggataagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccatgaacctttcgttctctgtcctcccggctttcctagcatctcagaggataagata 620

                                                                       
Query: 421 gaatggagttttcatttagaactacagataaggcatcagacttgattttccagataagcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatggagttttcatttagaactacagataaggcatcagacttgattttccagataagcg 680

                                                                       
Query: 481 cagataaattccaggtatatcataatgagcccgcccctgcactcccactaatcattttct 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 cagataaattccaggtatatcataatgagcccgcccctgcactcccactaattattttct 740

                                                                       
Query: 541 aacagagagctacaaacaacccccaaaatgaagttttgtgtgctggagtaactttcctga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacagagagctacaaacaacccccaaaatgaagttttgtgtgctggagtaactttcctga 800

                     
Query: 601 cacttgtata 610
           ||||||||||
Sbjct: 801 cacttgtata 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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