Query= MSMg01no521_f18.b1 MSMg01no521_f18.b1 CHROMAT_FILE:
MSMg01no521_f18.b1 PHD_FILE: MSMg01no521_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:40 2005
(630 letters)
>mm_chr8_118651146_118652175
Length = 1030
Score = 1081 bits (559), Expect = 0.0
Identities = 591/610 (96%), Gaps = 14/610 (2%)
Strand = Plus / Minus
Query: 23 gagagggagagggagagggagagggagagggagagagagggagagaagcaagcaacagtt 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gagagggagagggagagggagagggagagggagagagagggagagaagcaagcaacagtt 583
Query: 83 gctccacagtcatctccaaataatacactcatattgttcataattcagcaaataatacac 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gctccacagtcatctccaaataatacactcatattgttcataattcagcaaataatacac 523
Query: 143 acatattgttcataattcagatacagggttagaatcctatggggttcttcccacactgtc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acatattgttcataattcagatacagggttagaatcctatggggttcttcccacactgtc 463
Query: 203 acaaacatatggtattatccaacattccccaacattttctaataggaggtgcgggtttca 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acaaacatatggtattatccaacattccccaacattttctaataggaggtgcgggtttca 403
Query: 263 tccttatctcgtcttcctctgtgcattaaatgtacagtagccatttacgttcccccgggc 322
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 402 tccttatctcgtcttcctctgtgcattaaatgtacagtagccatttacattcccccgggc 343
Query: 323 ttagatttaaaagataattaagaacctacccagcagatttgtctaccaggaagagagagt 382
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttggatttaaaagataattaagaacctacccagcagatttgtctaccaggaagagagagt 283
Query: 383 gaaagcagaaagtgctatcatagctgtctttgtggaataatatatgatgggtgaaatgct 442
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaaagcagaaag------------tgtctttgtggaataatatatgatgggtgaaatgct 235
Query: 443 gggcccaaaggaagtaggatgctgttgatgaatgctaaggctactgctgtaggattctag 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 gggcccaaaggaagtaggatgctgttgatgaatgctaaggctactgctgtaggattctag 175
Query: 503 accacccaacaagatctgatttccagcttattcccagtgaagacctgtataactggtatt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 174 accacccaacaagatctgatttccagcttattcccagtgaagacctgtataactgatatt 115
Query: 563 ttttagttcctaaagtttgaagatgaagtttcatctcaaag--aanaaaaacactgattt 620
||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 114 tttaagttcctaaagtttgaagatgaagtttcatctcaaagaaaaaaaaaacactgattt 55
Query: 621 ttttttccag 630
||||||||||
Sbjct: 54 ttttttccag 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_f18.g1 MSMg01no521_f18.g1 CHROMAT_FILE:
MSMg01no521_f18.g1 PHD_FILE: MSMg01no521_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:40 2005
(630 letters)
>mm_chr8_118585992_118587019
Length = 1028
Score = 1120 bits (579), Expect = 0.0
Identities = 618/632 (97%), Gaps = 4/632 (0%)
Strand = Plus / Plus
Query: 1 attccttanacatgtgaaacctggctgcaggtaattgctttaagttagtgctaggggaac 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 attccttaaacatgtgaaacctggctgcaggtaattgctttaagttagtgctaggggaac 258
Query: 61 taggaaatggccctacccatatatatccagtaagatgaaaacttagagcaaacacaggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taggaaatggccctacccatatatatccagtaagatgaaaacttagagcaaacacaggac 318
Query: 121 agtaagtttcaaattccccaagtctatatcctctgaccttccttcccatctgaaaccaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtaagtttcaaattccccaagtctatatcctctgaccttccttcccatctgaaaccaaa 378
Query: 181 cgaagcagggccgtcatccagaaatgttacctggtgctcacacatatgtaaaaaa-tgaa 239
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 cggagcagggccatcatccagaaatgttacctggtgctcacacatatgtaaaaaaatgaa 438
Query: 240 tatcactgtttttgcattttggagtttctacaacaaacag-attcactgggtggtgagaa 298
|||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct: 439 tatcactgtttttgcattttggagtttctacaacaaacagcaatcactgggtggcaagaa 498
Query: 299 gcaaccaaacccccttttctgacagttctgaaggccagaggttttaagtcatggtatcag 358
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 499 gcaaccaaacccccttttctgacagttctgaagaccagaggttttaagtcatggtttcag 558
Query: 359 cagggacaggctcttcaagtccttccttgaaccttcctagctcttggtcgagggccacaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cagggacaggctcttcaagtccttccttgaaccttcctagctcttggtcgagggccacaa 618
Query: 419 gctttgctgtgccgtccccccccccccagctatgatccagctgctgcatgggcctgattt 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 619 gctttgctgtgcc--ccccccccccccagctatgatccagctgctgcatgggcctggttt 676
Query: 479 cagcgtgcatgttcactggtttgtctgtgtatcaccttctattgcaggtgtctctccaaa 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cagcgtgcatgttcactggtttgtctgtgtatcaccttctattgcaggtgtctctccaaa 736
Query: 539 gcctttcttttggtggtgtcgtatgtcatcagagaataacaaccaccctaatcttatcta 598
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gcctttcttttggtggtgttgtatgtcatcagagaataacaaccaccctaatcttatcta 796
Query: 599 gacttgattactgtgaagtaactttggtccca 630
||||||||||||||||||||||||||||||||
Sbjct: 797 gacttgattactgtgaagtaactttggtccca 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1028
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1018
Effective search space: 631160
Effective search space used: 631160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
