Query= MSMg01no522_c03.b1 MSMg01no522_c03.b1 CHROMAT_FILE:
MSMg01no522_c03.b1 PHD_FILE: MSMg01no522_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:39 2005
(659 letters)
>mm_chr8_8610451_8611509
Length = 1059
Score = 1236 bits (639), Expect = 0.0
Identities = 651/655 (99%)
Strand = Plus / Minus
Query: 5 gaattccaggcaactaagttctgctaagtgaaggagaaccagtctttcccagggattatc 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattccaggcaaccaagttctgctaagtgaaggagaaccagtctttcccagggattatc 722
Query: 65 taataccaaatggtcagccccgaatcctatatatacaagtaacactaaacatattcagca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 taataccaaatggtcagccccgaatcctatatatacaagtaacactaaacatattcagca 662
Query: 125 catctgtggaaactccacccttgaggacccacatctggaaccagaaaaaggagattaacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 catctgtggaaactccacccttgaggacccacatctggaaccagaaaaaggagattaacg 602
Query: 185 gctagacacataagtttagaggtacacacatggccacatggctctaattgtatgttcact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gctagacacataagtttagaggtacacacatggccacatggctctaattgtatgttcact 542
Query: 245 gtatgtgtctctctatgttcctctgccacatacacatggtcatatggttttactgtatct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtatgtgtctctctatgttcctctgccacatacacatggtcatatggttttactgtatct 482
Query: 305 tcactgggtgtctctctctctcttccactcacttcaagaagcatagaataagttttaggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcactgggtgtctctctctctcttccactcacttcaagaagcatagaataagttttaggg 422
Query: 365 acacaggcagagctgatctgtaagcaggatcatgctatacagcgtgagggatattttcta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acacaggcagagctgatctgtaagcaggatcatgctatacagcgtgagggatattttcta 362
Query: 425 aaaggagtatgcatctagaatcattctgccatttggatttaaaaacagggattcacactg 484
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 361 aaaggaatatgcatctagaatcattctgccgtttggatttaaaaacagggattcacactg 302
Query: 485 aaggaagcccagggtgacttagcgcttactgtgtagtccaggctgatctcgaacttgtgc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaggaagcccagggtgacttagcgcttactgtgtagtccaggctgatctcgaacttgtgc 242
Query: 545 aatccccctgcctcagcttcttgagtactgactgagattataggtacaagccatcaagcc 604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 241 aatccccctgcctcagcttcttgagtactgactaagattataggtacaagccatcaagcc 182
Query: 605 taaattttctttattaaataaatgactgagaactataactgagatctataaaagc 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaattttctttattaaataaatgactgagaactataactgagatctataaaagc 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_c03.g1 MSMg01no522_c03.g1 CHROMAT_FILE:
MSMg01no522_c03.g1 PHD_FILE: MSMg01no522_c03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:40 2005
(519 letters)
>mm_chr8_8439786_8440704
Length = 919
Score = 920 bits (476), Expect = 0.0
Identities = 508/523 (97%), Gaps = 8/523 (1%)
Strand = Plus / Plus
Query: 1 ataccaatgcataggatgtccaggtgcaagctataggatacacatgcacacacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataccaatgcataggatgtccaggtgcaagctataggatacacatgcacacacacacaca 260
Query: 61 cacacacacacacacacacacacacacacacaagtctgagcataatgtgacagttgaacc 120
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 261 cacacacacacacacacacacacacacacacaagcctgagcataaggtgacagttgaacc 320
Query: 121 tctatgggagtatccttggacaagtgaggcaatctagagctaccagacatcaagactcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctatgggagtatccttggacaagtgaggcaatctagagctaccagacatcaagactcta 380
Query: 181 agaatgagagattcgttggtaggaaggtatctctcggcaccaggtacctctgtgacaatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaatgagagattcgttggtaggaaggtatctctcggcaccaggtacctctgtgacaatc 440
Query: 241 gacacgcatttt----gaggcaggaagctgagttgactgatggggatttgcagctattgt 296
||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacacaca----aaaggaggcaggaagctgagttgactgatggggatttgcagctattgt 496
Query: 297 cccttgcagtccaggcccaagcctgctctccatcaccggaacatattgctgacacatcag 356
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cccttggagtccaggcccaagcctgctctccatcaccggaacatattgctgacacatcag 556
Query: 357 gctgtggggctgaggagtagtgggtactcccattagcactgcccagaggtaggaagcagc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gctgtggggctgaggagtagtgggtactcccattagcactgcccagaggtaggaagcagc 616
Query: 417 ctatagccccacagccctgggtggcttangcaggaagtacttctaacatccccgggcttc 476
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 617 ctatagccccacagccctgggtggcttaggcaggaagtacttctaacatccctgggcttc 676
Query: 477 ggttgagccttttaagaaactgtccacagtcagcaagaaaaga 519
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 677 ggttgagccttttaagaaactgtccacagccagcaagaaaaga 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
