BAC Information

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BAC

Clone NameMSMg01-522J09
Chromosome8 (Build37)
Map Location 104,328,566 - 104,328,955
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-522J09.T7 (MSMg01no522_j09.b1)MSMg01-522J09.TJ (MSMg01no522_j09.g1)
ACCAG593108AG593109
length770760
length of high quality
(start - end)		569 (52 - 620)527 (80 - 606)
definitionCHROMAT_FILE: MSMg01no522_j09.b1 PHD_FILE: MSMg01no522_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:13 2005CHROMAT_FILE: MSMg01no522_j09.g1 PHD_FILE: MSMg01no522_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:56:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAGCATAGGCATTTTTGTATGACTCTGATTTTTAATGAC
TCATATTTCATGCTATTGCCTCATCTTTAAAAAGAGAATTTTTTGAATGC
TCTTAAAGTACATTTAAGCCTTCCTGTACTCTGGTTCTGCTTCTGCAGAT
TCAACTGATAGCCACATTTACTTCTACATAACCTGTCATTGTTTAATGTT
ACAGCATTATATACAAAGGGGATATAGAAAAAGTTGACCATTTTACTAGA
CATGTACATTCTTGGATTTTGGTATCTGTATGGATCCTTGGGACCAGTAG
CCTCTGGATGCCAAGAGAGAGTTACATATTTCCCTTGTTCTACAATACAT
TTCTAAAGAGACATGAAGGTAAAGGTCTTAGTTTCACTATTGCTGTGATG
AAACACCATAACCAAAGCAACGTGAGGAGGAAGGTTTATTTTACCTTACA
CTTCCAGGTAACAGGCCATTGTCAGGGCAGAAACTCAAGCAAGGCAGAAG
CTTAGAGGCAGGAGCCAATGCAAAGGGCATGGAGGGGTTCTGCTTGTTAG
ATTGCTCCCCATGGCTTGCTCAGCTTGTCTTCTTATAGAACCAAGGGAAT
CCAGACCAGGAATGATTCTACCCATAATGGGATGGGCCCTACATATCTTC
TCTCCTCTCTCCCTCTCCCTTTTCCTTCCTGTTCCTCTTCCTGTTTCCTC
TTTCTCTTCCNCNTCCCTCC

NNNNACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCAATCACTGTGCACTGTG
GAAATCTGTATAAAAGTTCCTCTAAAAACTGAAAATTGATCTATCATATT
ACCAACTGCAGTGCTACTGGGTATTTGCCTAAAGGACCTGAAATCAACAT
GTTAAATAAATTCTTATATATCAATTTCTATTGCAGTACTCTTTACAATA
GCTGAGTTATAGCAAAACACAGGTGTCAAACAAAAGAGAAATGGATGAAG
AGCTTGTGGTGCATATGTACAAACAATGGAAAATTTTTTTAGCCATAATG
ATGAGTGATGTTCCCTCACTTGCAAGAAAATAGATAAGGTTGGAAATAAT
TATGGTGGTTTGAATAGGTATAGTCCTCCTCAACACATGAGTTTGAATGC
TTGGCCTTCAAGGAATGGCACTATTAGAAAATATGGTCTTGTTGGAGTAG
GTGTGGTCTTGAAGGACTTTTATCACTATGGAGGCAGGCTTTGAGGTTAT
ATATGCTCAAGCTATGCCTATTCACACAGTATCCTTCTTGCTGCCTGCAG
ATCAAGATATAGGACTCTCAACTCCTTCTTCAGCACCATGTCTTCCAGGA
CACTCTCATGCTTCCCACCATGATGATAATGAACTAAACTTCTGAAACTG
TGAGACACCCAATTAAGTGGTATCCTTTATAAGAGTTTCCTTGGACATGG
TGGTCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no522_j09.b1 MSMg01no522_j09.b1 CHROMAT_FILE:
MSMg01no522_j09.b1 PHD_FILE: MSMg01no522_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:13 2005
         (569 letters)



>mm_chr8_104328566_104329534
          Length = 969

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctagcataggcatttttgtatgactctgatttttaatgactcatatttcatgct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggaattctagcataggcatttttgtatgactctgatttttaatgactcatatttcatgct 331

                                                                       
Query: 64  attgcctcatctttaaaaagagaattttttgaatgctcttaaagtacatttaagccttcc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 attgcctcatctttaaaaagagaattttttgaatgctcttaaagtacatttaagccttcc 271

                                                                       
Query: 124 tgtactctggttctgcttctgcagattcaactgatagccacatttacttctacataacct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtactctggttctgcttctgcagattcaactgatagccacatttacttctacataacct 211

                                                                       
Query: 184 gtcattgtttaatgttacagcattatatacaaaggggatatagaaaaagttgaccatttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gtcattgtttaatgttacagcattatatacaaaggggatatagaaaaagttgaccatttt 151

                                                                       
Query: 244 actagacatgtacattcttggattttggtatctgtatggatccttgggaccagtagcctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 actagacatgtacattcttggattttggtatctgtatggatccttgggaccagtagcctc 91

                                                                       
Query: 304 tggatgccaagagagagttacatatttcccttgttctacaatacatttctaaagagacat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tggatgccaagagagagttacatatttcccttgttctacaatacatttctaaagagacat 31

                                         
Query: 364 gaaggtaaaggtcttagtttcactattgct 393
           ||||||||||||||||||||||||||||||
Sbjct: 30  gaaggtaaaggtcttagtttcactattgct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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