Query= MSMg01no522_k18.b1 MSMg01no522_k18.b1 CHROMAT_FILE:
MSMg01no522_k18.b1 PHD_FILE: MSMg01no522_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:19 2005
(583 letters)
>mm_chr8_110948454_110949436
Length = 983
Score = 1009 bits (522), Expect = 0.0
Identities = 565/588 (96%), Gaps = 15/588 (2%)
Strand = Plus / Minus
Query: 5 gaattccaggacagccagggctacgaagacaaaccttgtcttgagagaagagagagagag 64
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 965 gaattccaggacagccagggctacaaagacaaaccttgtcttgagaga------agagag 912
Query: 65 agagagagagagagagagagagagagagagagagagagagagagagagagagagatgcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 agagagagagagagagagagagagagagagagagagagagagagagagagagagatgcca 852
Query: 125 tcgaatcctcggactaaagcatttccttttccgtaatttgactttttgttggtgtcttc- 183
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 851 tcgaatcctcggactaaagcatttccttttccgccatttgactttttgttggtgtcttca 792
Query: 184 --------tcatgaatcccatagctttcccatgagcgcttggcatgcttgatactggata 235
|||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 791 tttacatttcatgaattccatagctttcccacgagcgcttggcatgcttgatactggata 732
Query: 236 tgtgcacaataaaccaaagcagttcctgactcctagagcttctgctcttcattataatct 295
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tgtgcatgataaaccaaagcagttcctgactcctagagcttctgctcttcattataatct 672
Query: 296 cctataaataattaccaattagccaagtgtcacaaaggaatggtacagggctgtcacagg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cctataaataattaccaattagccaagtgtcacaaaggaatggtacagggctgtcacagg 612
Query: 356 gataggatgggggatgatggaatctgagcagagggtggtcaggggaactctgggtaaagc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gataggatgggggatgatggaatctgagcagagggtggtcaggggaactctgggtaaagc 552
Query: 416 cagcaacttagctgaaggttgccccaacttgagctgggaagttttgtcatgatgttaaag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagcaacttagctgaaggttgccccaacttgagctgggaagttttgtcatgatgttaaag 492
Query: 476 actgaggctaaacttaaaggagcttgtgacttggttatccacctgcgaggagaagatgtc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 actgaggctaaacttaaaggagcttgtgacttggttatccacctgcgaggagaagatgtc 432
Query: 536 tgtgagactcttccatacacaccacagctgcaattttctggggggcat 583
|||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 tgtgagactcttccatacacaccacagctgcaatttcctggggggcat 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 114
Number of extensions: 37
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_k18.g1 MSMg01no522_k18.g1 CHROMAT_FILE:
MSMg01no522_k18.g1 PHD_FILE: MSMg01no522_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:19 2005
(611 letters)
>mm_chr8_110764530_110765540
Length = 1011
Score = 1151 bits (595), Expect = 0.0
Identities = 607/611 (99%)
Strand = Plus / Plus
Query: 1 tttttgttctctgcctctgaaagtgtaacagacatgttttgaaatacctgcactgtagaa 60
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tttttgttctctgcctctgaaggtgtaacagacgtgttttgaaatacctgcactgtagaa 260
Query: 61 acggtgcttagaagaaagaggaggaaaaaaaaatcaaagcgagaaataaaattacaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acggtgcttagaagaaagaggaggaaaaaaaaatcaaagcgagaaataaaattacaaaat 320
Query: 121 gggagagccagacctctttatccacaatttgcttgtgcccctcattgtggcaaaactttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagagccagacctctttatccacaatttgcttgtgcccctcattgtggcaaaactttg 380
Query: 181 ggaagggtcctgatggactgttgtcactttttgatgctgtaaccttaaaagtagttttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagggtcctgatggactgttgtcactttttgatgctgtaaccttaaaagtagttttag 440
Query: 241 ctgtgcgttatcttgcttggtgggtgggaaagggacaagactccccagaggctctggcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgcgttatcttgcttggtgggtgggaaagggacaagactccccagaggctctggcca 500
Query: 301 caagcacctctgtgtcctctgagaggcaaatgggttggaggcctgttgtcaacataggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagcacctctgtgtcctctgagaggcaaatgggttggaggcctgttgtcaacataggca 560
Query: 361 ggttcctgagcagggtccagcttgtccggtctagttcattgtccactccatcaaagggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttcctgagcagggtccagcttgtccggtctagttcattgtccactccatcaaagggtc 620
Query: 421 taatggtcagcagaggaggctaaatgtctcccccgtgacctgacattaacggagtggact 480
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 621 taatggtcagcagaggaggctaaatgtctcccctgtgacctgacattaaccgagtggact 680
Query: 481 ggtttaagtgttactgagggtgtcgcagaatgattcggacgccgatacccgttttcctca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtttaagtgttactgagggtgtcgcagaatgattcggacgccgatacccgttttcctca 740
Query: 541 atgagccgtcatttgggcatgacttcatacagctttgccctgacacagcccagccccgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgagccgtcatttgggcatgacttcatacagctttgccctgacacagcccagccccgga 800
Query: 601 gagctcccggg 611
|||||||||||
Sbjct: 801 gagctcccggg 811
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
