NNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATACTGGAGAGAAACCTTACAAATGTAATCAGTGTAGTAAA
GCCTTTGTATGTCAGAATGTTCTTCAAAGACATGAAAGAATTCATACTAG
AGTCAAATGTTATGAATGTAATCAATGTAGTAAATCTTTTGCTTCTCGTG
CTCAACTTCAAAAACATGAAAGAATTCATACTGGAGAGAAACCTTACAAA
TGTAATCAATGTGGTAAAGCCTATGCACAACTTAGTCCTCACAAAATGCA
TAAAATAACACATACTGGAGAGAAATCCTATGAATGTAAGCAATGTGGTA
AAGCCTTTGCTTATCGTGATCAGTGTGGGAAGCCATTGCAGAGTGGCAGT
TACAGAGTGGCAGTTGTAGAGTGGCAGTTGGCTACTGCTGGCCACCACAC
ATACATAGGAAGTAAAGGTTCTTTTGCCAAGATGAGGTTTTGAGAATTAA
CCAAAGTTAACCAATCAGATGAGAGACAAGTTAACCAATCAGATGAGAGA
CAAGTTAACCAATCAGATGAGAGAGAACGCCTCTCCTAGGCCTATATAAG
CAGCACCAGTTCTGGGCTTGGGGTCACTTTGCCTCTGCAATCAAGCTCTC
CCAATAAACGTGTGTGGAAGGATCCTGTTGCAGCGTCGTTCTTCCTGGCC
AGTCGGGTGCGCGCAAGAGATCAGCTTTGAATACATATAAGAATTCATAC
TGGGGAGAATC

NCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTATTTGCTGAAAATGTT
AAGAGGTTGTTCAATGCCACCCATTTGTAATCACCACAATAAGAGAGAAG
ATAGAGCATGAATATCAAATGTGTTCAGTATTCTAGCAAAAAAAAAAAAA
GATACAAAACACGTATCATTAAATTCTAAAACCAGATTTTCATGTAGTAT
TTAAAGTTGGTAGCATCTGGGAAGTCACTTCTATAATTATCAGTGTGTCA
TTTTAAAGTGTGTAAGAACATTACTTACATGTTGGTTTGTCATCTCTGGG
TAATAATTTTTCTACCAACACCTGTATTAAAATCTTGATGGCCAGAAGTC
CATTCAATTGGAAATCTGGAAAGCTGCTGCAAAAAATGCATCAAGGTTTT
TTAAAATATAGTCTTACTTGTCTAAAAGCCAAATACAAAGGAGCAAAATT
TCACAGGTGAGTTGTTTAGATTGAAGCCAACAAATCAATTTCTACCCACT
TTTAAAAGAAGGATTGTGTGGTAGAAAAGGCCTCATCAAGTTGCATCTTT
GGAAACTGAATTGATGTGAAATTAAACCTAGAAAAACAGAGAAGATGCNG
AGAAAGAAAGAAGGAAAGGAAGGGAGGGAGAGAGGGAGGAANGGAGGGGA
GGGAGACNGGAAGGCTTATAGATAGTAAGAAAGAAAGAAGGAAAGATAGA
TAGAGAGAGAGAGTGAGAN

Query= MSMg01no522_n04.g1 MSMg01no522_n04.g1 CHROMAT_FILE:
MSMg01no522_n04.g1 PHD_FILE: MSMg01no522_n04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:32 2005
         (604 letters)



>mm_chr8_4828295_4829300
          Length = 1006

 Score = 1081 bits (559), Expect = 0.0
 Identities = 594/606 (98%), Gaps = 2/606 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttatttgctgaaaatgttaagaggttgttcaatgccacccatttgtaatcaccacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 actttatttgctgaaaatgttaagaggttgttcaatgccacccatttgtaatcaccacaa 747

                                                                       
Query: 61  taagagagaagatagagcatgaatatcaaatgtgttcagtattctagc-aaaaaaaaaaa 119
           |||||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||||
Sbjct: 746 taagagagaaaatagagcatgaatattaaatgttttcagtattctagcaaaaaaaaaaaa 687

                                                                       
Query: 120 aagatacaaaacacgtatcattaaattctaaaaccagattttcatgtagtatttaaagtt 179
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 686 aagatacaacacacgtatcattaaattctaaaaccagattttcatgtcgtatttaaagtt 627

                                                                       
Query: 180 ggtagcatctgggaagtcacttctataattatcagtgtgtcattttaaagtgtgtaagaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggtagcatctgggaagtcacttctataattatcagtgtgtcattttaaagtgtgtaagaa 567

                                                                       
Query: 240 cattacttacatgttggtttgtcatctctgggtaataatttttctaccaacacctgtatt 299
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 566 cattacttacatgttggtttgtcatttctgggtaataatttttctaccaacacctgtatt 507

                                                                       
Query: 300 aaaatcttgatggccagaagtccattcaattggaaatctggaaagctgctgcaaaaaatg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 506 aaaatcttgatggccagaagtccattcaattggaaatctggaaagctgctgcaaaaattg 447

                                                                       
Query: 360 catcaaggttttttaaaatatagtcttacttgtctaaaagccaaatacaaaggagcaaaa 419
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catcaaggtttttaaaaatatagtcttacttgtctaaaagccaaatacaaaggagcaaaa 387

                                                                       
Query: 420 tttcacaggtgagttgtttagattgaagccaacaaatcaatttctacccacttttaaaag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttcacaggtgagttgtttagattgaagccaacaaatcaatttctacccacttttaaaag 327

                                                                       
Query: 480 aaggattgtgtggtagaaaaggcctcatcaagttgcatctttggaaactgaattgatgtg 539
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 326 aaggattgtgtggtagaaaaggcctcatcaagttgcatcttttgaaactgaattgatgtg 267

                                                                       
Query: 540 aaattaaacctag-aaaaacagagaagatgcngagaaagaaagaaggaaaggaagggagg 598
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 aaattaaacctagaaaaaacagagaagatgcagagaaagaaagaaggaaaggaagggagg 207

                 
Query: 599 gagaga 604
           ||||||
Sbjct: 206 gagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1006
Length adjustment: 10
Effective length of query: 594
Effective length of database: 996
Effective search space:   591624
Effective search space used:   591624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)