Query= MSMg01no523_c19.b1 MSMg01no523_c19.b1 CHROMAT_FILE:
MSMg01no523_c19.b1 PHD_FILE: MSMg01no523_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:00 2005
(489 letters)
>mm_chr8_54143156_54144044
Length = 889
Score = 855 bits (442), Expect = 0.0
Identities = 476/490 (97%), Gaps = 10/490 (2%)
Strand = Plus / Plus
Query: 5 gaattcatttt---atccagtattgctaagactgttgttacatttttttttcctcttaaa 61
||||||||||| || |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattcattttaacat--agtattgctaagactgttgttaca--tttttttcctcttaaa 260
Query: 62 aaaggagaatgcacaggaaacattttatataatcttgcaacagttgcaactaccttacac 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 aaaggagaatgcacaggaaacattttatataatcttgcaacaattgcaactaccttacac 320
Query: 122 -aaaaaaatttaaatgaaacaggaattggtaatgaagatcctaaaacataaaaatagaac 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaaaatttaaataaaacaggaattggtaatgaagatcctaaaacataaaaatagaac 380
Query: 181 catgtaagtcgtttctgttaaaattatgaatggtgatatatgcaatgatgttaccaccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtaagtcgtttctgttaaaattatgaatggtgatatatgcaatgatgttaccaccca 440
Query: 241 caccattaaaagactttagaaagatctactccatgaggtcacaagaataccatgaagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccattaaaagactttagaaagatctactccatgaggtcacaagaataccatgaagcat 500
Query: 301 gtcaaacttactttctttacaatttaaaaataatgaaatctttcaattgttcaaaaacat 360
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 501 gtcaaacttactttctttacaatttagaattaatgaaatctttcaattgttcaaaaacat 560
Query: 361 ttattcaagagaaa-gaagatgagttgcaaataaaaggaaaataaaatgattcttaatga 419
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattcaag-gaaaagaagatgagttgcaaataaaaggaaaataaaatgattcttaatga 619
Query: 420 tattctgctatactcatagattgatgcctggcccatttgccatcaaaaggcatttaagtc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattctgctatactcatagattgatgcctggcccatttgccatcaaaaggcatttaagtc 679
Query: 480 agcaactgat 489
||||||||||
Sbjct: 680 agcaactgat 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_c19.g1 MSMg01no523_c19.g1 CHROMAT_FILE:
MSMg01no523_c19.g1 PHD_FILE: MSMg01no523_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:00 2005
(423 letters)
>mm_chr8_54282182_54283004
Length = 823
Score = 810 bits (419), Expect = 0.0
Identities = 422/423 (99%)
Strand = Plus / Minus
Query: 1 ataggtggaagaattggcatattatctgcctcagtattcagtgattatgggagaatgacc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ataggtggaagaattgtcatattatctgcctcagtattcagtgattatgggagaatgacc 564
Query: 61 tacagaatgaatttgaaggatgagtgctggggtcattttgcaggtgagatgagatttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacagaatgaatttgaaggatgagtgctggggtcattttgcaggtgagatgagatttagt 504
Query: 121 aattatcttttgaaaatgaacataggttaaataaagatatataaagttgaacatattgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aattatcttttgaaaatgaacataggttaaataaagatatataaagttgaacatattgtt 444
Query: 181 ggaagactggtatgtctctagttagtccagtaattagtaagtggaagcatttatgcaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaagactggtatgtctctagttagtccagtaattagtaagtggaagcatttatgcaaag 384
Query: 241 cttaaatgtcttctctgttgctatcttaatgcttcataactattatggcctgaaataaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cttaaatgtcttctctgttgctatcttaatgcttcataactattatggcctgaaataaat 324
Query: 301 tgtgaatctgcaccaatattttgataacagtgttaaatagaatagaaagaatatttggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtgaatctgcaccaatattttgataacagtgttaaatagaatagaaagaatatttggat 264
Query: 361 tatagcaatgtatatttcttatacaagactgttggagaaaaaattatgctatctctattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tatagcaatgtatatttcttatacaagactgttggagaaaaaattatgctatctctattt 204
Query: 421 cga 423
|||
Sbjct: 203 cga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
