BAC Information

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BAC

Clone NameMSMg01-523P17
Chromosome8 (Build37)
Map Location 94,783,030 - 94,969,089
singlet/doubletdoublet
Overlap gene4933436C20Rik, Irx5
Upstream geneRpgrip1l, AJ237917, LOC100041254, LOC674324, LOC100040628, Irx3
Downstream geneIrx6, LOC100041325, Mmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523P17.T7 (MSMg01no523_p17.b1)MSMg01-523P17.TJ (MSMg01no523_p17.g1)
ACCAG594168AG594169
length761758
length of high quality
(start - end)
626 (42 - 667)538 (72 - 609)
definitionCHROMAT_FILE: MSMg01no523_p17.b1 PHD_FILE: MSMg01no523_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:05 2005CHROMAT_FILE: MSMg01no523_p17.g1 PHD_FILE: MSMg01no523_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,783,030 - 94,783,648)(94,968,552 - 94,969,089)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCACTACCTAGGCCAGGCAAACCTCAGAAGCAATCCTCCTGCGTCAGC
CTGCTGAATAACTCTGATTGCAGGTATATGCCACCAGGCCCAGGGATACA
TACATGCATTACATTACATTTAAATATAAAACATTTTTTAAAAGTCAAAT
GGTATGTAAAATAAAGAAGAAATCGATGCATCTCTCTGCCCAAATAAATA
GGACCCAAGGATGGAGGAGATGCAGGGACTAAATTTAGTTGATTGTACTG
TGGCTGAGGAGATCTTTTCATTTGAGCGGATCTGGTTTGAGGCATTAACC
AAGGATAAGTAGATGTGCCAAAGAAAATGGCTCAGACTTGTGTCCACACC
AGGTCTAGAACTGGGCTAAGAGACTCACATGCAGTCAGAAGTACACAGCT
GGGGGATGTAGACGGATGTACAGAGTAGATTTACTCTGAACTCCATGTAA
CTAACTGTGAGCAATGACTTCTCAAGGGGCCGCTGCTTCCGTCCCCACCA
TGCAAGAGGGTTGGTTGAAGAGACAAGATTGAGAATCCTAGAATGCACCT
CCAGACTCTCCCTGCAGGGCAGACTTGACCCTGAACTTGCCCCCTAGTGA
CAGTGGTTCTGTCCAAGGTCCCCACCAGTCCGGTTACACCTGCTGCTTTC
TAATCTCAAGAACGCCTGGGATCCGGCACGAGGGGATAGGACCACTGATG
CCGCCTGTGTN
ATGCTAGTGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTTCAGGGGTAAATATAGGTAGTTCAG
AGAGATTTTATGACATACTGTACTGGCTCTTCTTCCAGAGACTTCTTTAA
TTACTGGGGTGGGGAGGGCTGGGGGGCAGCAAAGTGCTGACAAAGAGGGG
CTGGGCTGCGAGCCTCTACTGCCCACAAGGACAGGCTGGGCACTGTGCAC
ACTGAGTGAGGACCTCCTGCCAGGCCCACAGCTAACCTCCCTCCTCCCAC
CTGTCATGGGAAGGGTCACCTGTAGGGAGCTCCTCTAACCTAGAGAAGGT
GGAATGGTACACCCTGCATAAGAGATAGATAGGTAAGAAGCAGGCAGCAG
CCTGGTTGCCTGGCCTTCCACCAGCCAGTTTGGGTTGAAACTCAGGGTAA
AGGTGTCTTGATCCAACTCAGCAAGAAGGTGGCTTCTTGTGCTCCTTCAG
GGGACTCTAGACTCTATGCTATCTCCTCCACACTGAGCTCAATATGCTGC
TGTGCCCAACCCTCTACTGCTGGCCTCTCCCTCCTCTGTCCCCAACCCCT
CAACTGACATCAGTTCCTCAAAGGCAAACCTGTGGACCAACAAGGCCCTG
AGAAGTCATAATAACAAGTATGAAGCACTTATCCTGCTTGACCAGTGTCA
GATAAGGTCAGTGAACGGAATCCATGACCATCCAGGACAAGTGACTACAC
CTGGGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_p17.b1 MSMg01no523_p17.b1 CHROMAT_FILE:
MSMg01no523_p17.b1 PHD_FILE: MSMg01no523_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:05 2005
         (626 letters)



>mm_chr8_94782823_94783848
          Length = 1026

 Score = 1197 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcactacctaggccaggcaaacctcagaagcaatcctcctgcgtcagcctgctgaa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcactacctaggccaggcaaacctcagaagcaatcctcctgcgtcagcctgctgaa 267

                                                                       
Query: 68  taactctgattgcaggtatatgccaccaggcccagggatacatacatgcattacattaca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 taactctgattgcaggtatatgccaccaggcccagggatacatacatgcattacattaca 327

                                                                       
Query: 128 tttaaatataaaacattttttaaaagtcaaatggtatgtaaaataaagaagaaatcgatg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttaaatataaaacattttttaaaagtcaaatggtatgtaaaataaagaagaaatcgatg 387

                                                                       
Query: 188 catctctctgcccaaataaataggacccaaggatggaggagatgcagggactaaatttag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catctctctgcccaaataaataggacccaaggatggaggagatgcagggactaaatttag 447

                                                                       
Query: 248 ttgattgtactgtggctgaggagatcttttcatttgagcggatctggtttgaggcattaa 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttgattgtactgtggctgaggagatcttttcatttgagcggatctggtttgaggcattaa 507

                                                                       
Query: 308 ccaaggataagtagatgtgccaaagaaaatggctcagacttgtgtccacaccaggtctag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccaaggataagtagatgtgccaaagaaaatggctcagacttgtgtccacaccaggtctag 567

                                                                       
Query: 368 aactgggctaagagactcacatgcagtcagaagtacacagctgggggatgtagacggatg 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aactgggctaagagactcacatgcagtcagaagtacacagctgggggatgtagacggatg 627

                                                                       
Query: 428 tacagagtagatttactctgaactccatgtaactaactgtgagcaatgacttctcaaggg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tacagagtagatttactctgaactccatgtaactaactgtgagcaatgacttctcaaggg 687

                                                                       
Query: 488 gccgctgcttccgtccccaccatgcaagagggttggttgaagagacaagattgagaatcc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gccgctgcttccgtccccaccatgcaagagggttggttgaagagacaagattgagaatcc 747

                                                                       
Query: 548 tagaatgcacctccagactctccctgcagggcagacttgaccctgaacttgccccctagt 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tagaatgcacctccagactctccctgcagggcagacttgaccctgaacttgccccctagt 807

                              
Query: 608 gacagtggttctgtccaag 626
           |||||||||||||||||||
Sbjct: 808 gacagtggttctgtccaag 826


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no523_p17.g1 MSMg01no523_p17.g1 CHROMAT_FILE:
MSMg01no523_p17.g1 PHD_FILE: MSMg01no523_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:05 2005
         (538 letters)



>mm_chr8_94968352_94969289
          Length = 938

 Score = 1033 bits (534), Expect = 0.0
 Identities = 537/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttcaggggtaaatataggtagttcagagagattttatgacatactgtactggctctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 actttcaggggtaaatataggtagttcagagagattttatgacatactgtactggctctt 679

                                                                       
Query: 61  cttccagagacttctttaattactggggtggggagggctggggggcagcaaagtgctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cttccagagacttctttaattactggggtggggagggctggggggcagcaaagtgctgac 619

                                                                       
Query: 121 aaagaggggctgggctgcgagcctctactgcccacaaggacaggctgggcactgtgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 aaagaggggctgggctgcgagcctctactgcccacaaggacaggctgggcactgtgcaca 559

                                                                       
Query: 181 ctgagtgaggacctcctgccaggcccacagctaacctccctcctcccacctgtcatggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctgagtgaggacctcctgccaggcccacagctaacctccctcctcccacctgtcatggga 499

                                                                       
Query: 241 agggtcacctgtagggagctcctctaacctagagaaggtggaatggtacaccctgcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agggtcacctgtagggagctcctctaacctagagaaggtggaatggtacaccctgcataa 439

                                                                       
Query: 301 gagatagataggtaagaagcaggcagcagcctggttgcctggccttccaccagccagttt 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 438 gagatagataggtaagaagcaggcagcaccctggttgcctggccttccaccagccagttt 379

                                                                       
Query: 361 gggttgaaactcagggtaaaggtgtcttgatccaactcagcaagaaggtggcttcttgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gggttgaaactcagggtaaaggtgtcttgatccaactcagcaagaaggtggcttcttgtg 319

                                                                       
Query: 421 ctccttcaggggactctagactctatgctatctcctccacactgagctcaatatgctgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctccttcaggggactctagactctatgctatctcctccacactgagctcaatatgctgct 259

                                                                     
Query: 481 gtgcccaaccctctactgctggcctctccctcctctgtccccaacccctcaactgaca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtgcccaaccctctactgctggcctctccctcctctgtccccaacccctcaactgaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)