BAC Information

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BAC

Clone NameMSMg01-524C16
Chromosome8 (Build37)
Map Location 69,535,413 - 69,536,032
singlet/doubletsinglet
Overlap genenone
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
Downstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524C16.T7 (MSMg01no524_c16.b1)MSMg01-524C16.TJ (MSMg01no524_c16.g1)
ACCAG594308AG594309
length765765
length of high quality
(start - end)
634 (39 - 672)646 (67 - 712)
definitionCHROMAT_FILE: MSMg01no524_c16.b1 PHD_FILE: MSMg01no524_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:21 2005CHROMAT_FILE: MSMg01no524_c16.g1 PHD_FILE: MSMg01no524_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TAAGAATGTTGCCTATTCATTGACATTCAGAATTGCCTCTAGTATTGTAT
GAGAGATAGTGAAAGAAATCAGGCATTATTATCTACTACATAGAGTTAGA
AATATCAGGGCAAGCTTAGCAAAGTAAGTTTAGAATTCTTATTATAGTCA
TTTATAGCAGACTACATTACTTATTAGTAGAAAGTGCCCCCACACTATCA
GTTAGAATAAAAGCCAAGTCGCTCCCATATACAGGAATTTACAATGGTTT
AGGAAGTAGATCGGGCTGTGGTTTTAGAGTATTGTATTATTCATGAGAAG
GTTAGCTAGATCGGAACTCCCTAATTAGAACCATGACTTGGGCATGAAAA
CCCTTGCCCTGGGAATGTAAAGATCTCACACCTGGCTTCTAAGACTATAG
CTGACCTTAGATAGAGCTGACTTTGTCTCAGTTGTTTTATTGCCCAGTTC
CTGCCAGTCTTTGTGTTTGCATTCCTCTGTTTTGTGTAAGAGTCATTAAG
CATCCAGTAACCTCACATTGTACCTTGCTGATGTGTCACCTAACTTCCCT
ATTTTCTTCTGTATAAAAAGTTGGATGCTCAATTTGACAAATTACATTCA
GATTCAGCACACTCCCTTGTGTCCTGTCTGTTTGTTAATCCATTCTCAAC
AACCCTTGCTCAACTGCAATCAGAAACCCATTCCCTACAGATCAGAGACC
CAATAGAGGCTCATC
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATTTATTTAGCAAGTGAAAAAAAAAGATTATGA
CCTGTTATTGTTAGAATAGTGTACATGTGGTAGGGGTATGAATTTTGAAG
CCATATTTCTAGCCTTCGAAATATGTTCTGACATTTACTACAAGTGTGCC
CTTGAGCTAATGGCTTAATATTCTTGTCTTCATTATACAATGTAACAAGG
GGACTGGGCCAACTCACTTGATCTTTATGGAGATCAAATAATACACATGT
GGAAAAAACCTATTAGTCAGTGAAATTTTGTTACTGTTATTTCTTCTGGG
TCAAGCAAAAGCAATGCTTTTTCCTCCAGTTATTCCAAGTATAAATAATA
AATAAATAATAAATAATAAATAATAAATAAATAATTGCCACAGTCAGCTG
ACGTCACTGAGTCATTACACTGCTTCAGTCAATGGCTGATTGTAGAGAAG
ACATATCTGAAACCATAGTGACACAAACAGATCTCCTTTCTTTGCGCAAT
TCCAACTTAGAAATTATACCTTTTATCAATGAATTTCTAAAAACAATGGG
TGGTTGAGTGTGGATTTTTAAAAAACATTTTCATAGTTATTTTTAATGTT
CCTAGAATATCATTTTTTTCTTTTTTTAATGAATATTTTTATTAGGTATT
TTCTTCATTTACATTTCCAATGCTATCCCAAAANNTCCCCCATACCCTCC
CCTCCACTCCCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_c16.g1 MSMg01no524_c16.g1 CHROMAT_FILE:
MSMg01no524_c16.g1 PHD_FILE: MSMg01no524_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:21 2005
         (646 letters)



>mm_chr8_69535342_69536387
          Length = 1046

 Score = 1058 bits (547), Expect = 0.0
 Identities = 609/653 (93%), Gaps = 40/653 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttatttagcaagtg--aaaaaaaaagattatgacctgttattgttagaatagtgtac 58
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 catttatttagcaagtgaaaaaaaaaaagattatgacctgttattgttagaatagtgtac 632

                                                                       
Query: 59  atgtggtaggggtatgaattttgaagccatatttctagccttcgaaatatgttctgacat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 atgtggtaggggtatgaattttgaagccatatttctagccttcgaaatatgttctgacat 572

                                                                       
Query: 119 ttactacaagtgtgcccttgagctaatggcttaatattcttgtcttcattatacaatgta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttactacaagtgtgcccttgagctaatggcttaatattcttgtcttcattatacaatgta 512

                                                                       
Query: 179 acaaggggactgggccaactcacttgatctttatggagatcaaataatacacatgtggaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 acaaggggactgggccaactcacttgatctttatggagatcaaataatacacatgtggaa 452

                                                                       
Query: 239 aaaacctattagtcagtgaaattttgttactgttatttcttctgggtcaagcaaaagcaa 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaaacctattagtcagtgaaattttgttactgttatttcttctgggtcaagcaaaagcaa 392

                                                                       
Query: 299 tgctttttcctccagttattccaagtataaataataaataaataataaataata----aa 354
           |||||||||||||||||||||||||                            |    ||
Sbjct: 391 tgctttttcctccagttattccaag----------------------------agcccaa 360

                                                                       
Query: 355 -taataaataaataattgccacagtcagctgacgtcactgagtcattacactgcttcagt 413
            |     |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gt-----ataaataattgccacagtcagctgacgtcactgagtcattacactgcttcagt 305

                                                                       
Query: 414 caatggctgattgtagagaagacatatctgaaaccatagtgacacaaacagatctccttt 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caatggctgattgtagagaagacatatctgaaaccatagtgacacaaacagatctccttt 245

                                                                       
Query: 474 ctttgcgcaattccaacttagaaattataccttttatcaatgaatttctaaaaacaatgg 533
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ctttgttcaattccaacttagaaattataccttttatcaatgaatttctaaaaacaatgg 185

                                                                       
Query: 534 gtggttgagtgtggatttttaaaaaacattttcatagttatttttaatgttcctagaata 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gtggttgagtgtggatttttaaaaaacattttcatagttatttttaatgttcctagaata 125

                                                                
Query: 594 tcatttttttctttttttaatgaatatttttattaggtattttcttcatttac 646
           ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 124 tcattgttttcttttttaaatgaatatttttattaggtattttcttcatttac 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)