BAC Information

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BAC

Clone NameMSMg01-524G08
Chromosome8 (Build37)
Map Location 67,591,798 - 67,592,402
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524G08.T7 (MSMg01no524_g08.b1)MSMg01-524G08.TJ (MSMg01no524_g08.g1)
ACCAG594483AG594484
length739760
length of high quality
(start - end)
641 (40 - 680)603 (66 - 668)
definitionCHROMAT_FILE: MSMg01no524_g08.b1 PHD_FILE: MSMg01no524_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:40 2005CHROMAT_FILE: MSMg01no524_g08.g1 PHD_FILE: MSMg01no524_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTC
TACACAATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTT
GTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAG
TAAAGCTTTAGGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTATCCTT
GAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTATTCCA
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATGGTGACTCAGCATAATATTGCCAATACTTTCAG
AGTACGCCTGAATGGAAAGTTCTCCTTGTGGAGTAACCGCTAGAACCTCC
CTGGAGAGAGACTCACTTCCTGCCACAGCTTGTGACTTTTCCCAGCTTGA
GGTGAACGGTCAAGGTGAGGGTCTGGGAAATCTGAACCGGAACTAGATTC
CATTCCCATTCCACAATCCCATCGTTATCCAGGCCCAGAAACAAACTCCT
TTTTATGTTTTCCTTGAACAAGAAGTGGGCTTGTAAAACGCAGATTAGCT
CTCAAAGGTACACAGAGAGATACAATAGAGGAGATTGGTCAAGGAAAGTT
CGGGAGGGAAGGCTAATAAAAGATGCTCTACAGTGCAGAGCGAGTGCTTA
ATCCCTCAAGTCCATTGATGAGACTCCTCCCACCACCCCAGCCCCCCACC
CAGGAGCGAGTTGTCAAAGCAATTCAGGCTGAATGAGAAACACTTGGCCA
GTTGGTGCCCAGAGGTTTGGTGCTATTCATCTTGCCCTGCTTATTCTAAC
AAACCAAAGTAATTTTTTTTTTTTTGACAGTTTTAGGCAGGGTTGTCATT
TAAGGGGTGAAAAGAAGAAAAGCTAANATGTAGACTCTTGGAGTAAGCCT
CTCTGAGTAGCCAGAAAGGAAAGGGACCGAGACAGAATAGGATATATTTG
ACCCCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_g08.g1 MSMg01no524_g08.g1 CHROMAT_FILE:
MSMg01no524_g08.g1 PHD_FILE: MSMg01no524_g08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:40 2005
         (603 letters)



>mm_chr8_67591598_67592602
          Length = 1005

 Score = 1123 bits (581), Expect = 0.0
 Identities = 599/605 (99%), Gaps = 2/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtgactcagcataatattgccaatactttcagagtacgcctgaatggaaagttctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtgactcagcataatattgccaatactttcagagtacgcctgaatggaaagttctcc 260

                                                                       
Query: 61  ttgtggagtaaccgctagaacctccctggagagagactcacttcctgccacagcttgtga 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtggagtaaccgctagaaactccctggagagagactcacttcctgccacagcttgtga 320

                                                                       
Query: 121 cttttcccagcttgaggtgaacggtcaaggtgagggtctgggaaatctgaaccggaacta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 cttttcccagcttgaggtgaacggtcaaggtgagggtctgggaaatctgaaccgaaacta 380

                                                                       
Query: 181 gattccattcccattccacaatcccatcgttatccaggcccagaaacaaactccttttta 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattccattcccattccgcaatcccatcgttatccaggcccagaaacaaactccttttta 440

                                                                       
Query: 241 tgttttccttgaacaagaagtgggcttgtaaaacgcagattagctctcaaaggtacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgttttccttgaacaagaagtgggcttgtaaaacgcagattagctctcaaaggtacacag 500

                                                                       
Query: 301 agagatacaatagaggagattggtcaaggaaagttcgggagggaaggctaataaaagatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagatacaatagaggagattggtcaaggaaagttcgggagggaaggctaataaaagatg 560

                                                                       
Query: 361 ctctacagtgcagagcgagtgcttaatccctcaagtccattgatgagactcctcccacca 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctacagttcagagcgagtgcttaatccctcaagtccattgatgagactcctcccacca 620

                                                                       
Query: 421 ccccagccccccacccaggagcgagttgtcaaagcaattcaggctgaatgagaaacactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccccagccccccacccaggagcgagttgtcaaagcaattcaggctgaatgagaaacactt 680

                                                                       
Query: 481 ggccagttggtgcccagaggtttggtgctattcatcttgccctgcttattctaacaaacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggccagttggtgcccagaggtttggtgctattcatcttgccctgcttattctaacaaacc 740

                                                                       
Query: 541 aaagtaattttttttttttt-gacagttttaggcagggttgtc-atttaaggggtgaaaa 598
           |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 aaagtaattttttttttttttgacagttttaggcagggttgtccatttaaggggtgaaaa 800

                
Query: 599 gaaga 603
           |||||
Sbjct: 801 gaaga 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1005
Length adjustment: 10
Effective length of query: 593
Effective length of database: 995
Effective search space:   590035
Effective search space used:   590035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)