Query= MSMg01no524_j12.b1 MSMg01no524_j12.b1 CHROMAT_FILE:
MSMg01no524_j12.b1 PHD_FILE: MSMg01no524_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:55 2005
(562 letters)
>mm_chr8_46207110_46208071
Length = 962
Score = 988 bits (511), Expect = 0.0
Identities = 544/555 (98%)
Strand = Plus / Plus
Query: 8 gaattccagagcattggaaaaaaatgatttttttttctttacttgtagtcctagggagtg 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 208 gaattccagagcattggaaaaaaatgatttttttttctttacttgtagtcctagagagtg 267
Query: 68 aacctcctgtctcacacaggcttggccccagcttcttcagatgtagtttgctatcccatg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aacctcctgtctcacacaggcttggccccagcttcttcagatgtagtttgctatcccatg 327
Query: 128 tagggtcacatatcagactatataggggtgggaagtcactaaaaaattgccaacagtgaa 187
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 328 tagggtcacatatgagactatataggggtgggaagtcactaaaaaattggcaacaatgaa 387
Query: 188 agttttctcagtgtgcaatggctaaaaattaattttaaaccaaatgagtaatgaattgga 247
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 388 agttttctcaatgtgcagtggctaaaaattgattttaaaccaaatgagtaatgaattgga 447
Query: 248 ggttttcctcgacacatttctgcagcttagttctgcacaggagacatttgtaatttgtac 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggttttcctcgacacatttctgcagcttagttctgcacaggagacatttgtaatttgtac 507
Query: 308 tattcatgccgccacaacacaactccgataaacacagctttggtgagacgcaagactatg 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tattcatgccgccacaacacaactccgataaacacagctttggtgagacgcaagactatg 567
Query: 368 tgatgctaggagctcacatgttctcatgtgctgtcctcttccagaaacataatggtttca 427
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tgatgctaggagctcacgtgttctcatgtgctgtcctcttccagaaacataatggtttca 627
Query: 428 ttactgaaagaaaccatcccatcactcctccgcacgaatcaatctggcgtgtccttttgg 487
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 628 ttactgaaagaaaccatcccttcactcctccgcacgaatcaatctgatgtgtccttttgg 687
Query: 488 aatgctggcttttctgaaactgctgatggagttgctgatttaagtttcctgacaagttat 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aatgctggcttttctgaaactgctgatggagttgctgatttaagtttcctgacaagttat 747
Query: 548 tgaataaagttcggt 562
|||||||||||||||
Sbjct: 748 tgaataaagttcggt 762
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_j12.g1 MSMg01no524_j12.g1 CHROMAT_FILE:
MSMg01no524_j12.g1 PHD_FILE: MSMg01no524_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:55 2005
(529 letters)
>mm_chr8_46358273_46359200
Length = 928
Score = 953 bits (493), Expect = 0.0
Identities = 520/529 (98%), Gaps = 1/529 (0%)
Strand = Plus / Minus
Query: 1 cctatccagatgtgtggcgtatatatggcggaattcttagtctgtccgagattacaaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 728 cctatccagatgtgtggcgtatatatggcggaattcttagtctgtccgagattacgaaag 669
Query: 61 aaacgccttccttgagaataaaggagcttattattcatcaggaatacaaagtctcagaag 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 aaacgccttcctcgagaataaaggagcttattattcatcaggaatacaaagtctcagaag 609
Query: 121 gcaattatgatattgccttaataaagcttcagacgcccctgaattatactggtatgcagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gcaattatgatattgccttaataaagcttcagacgcccctgaattatactggtatgcagc 549
Query: 181 atatttaagaggaacctgccacaactcaatggtattggtgtcaatttccacttcagtttg 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atatttaagaggaacctg-cacaactcaatggtattggtgtcaatttccacttcagtttg 490
Query: 241 cgtgagaagagagatctgcagcaattgtctttgtgtcctggttggtgaggctgagggaga 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 catgagaagagagatctgcagcaattgtctttgtgtcctggttggtgaggctgagggaga 430
Query: 301 gatgaggccacctgggcagtagaaatcccgtgtcctcccatacattcactgctatctgag 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 429 gatgaggccacctgggcagtagaaatcccgtgtcttcccatacattcactgctatctgag 370
Query: 361 gggcaaaaaagcttcattactttctcagagtggcatgcaactgagtgtatggtattggtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gggcaaaaaagcttcattactttctcagagtggcatgcaactgagtgtatggtattggtc 310
Query: 421 taggaaagattttgacatctggggacattgggcatcttttgacaagattggcagaatgac 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 309 taggaaagattttgacatctggggacattgggcatcttctgacaagattggcagaatgac 250
Query: 481 tatggcttaggaatatacaaccatatgaaagtaaacagaactagatgtt 529
|||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 249 tatggcttaggaatatacaaccatatgaaagtgaacgggactagatgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
