BAC Information

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BAC

Clone NameMSMg01-524L13
Chromosome8 (Build37)
Map Location 110,161,917 - 110,162,270
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7
Downstream geneLOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524L13.T7 (MSMg01no524_l13.b1)MSMg01-524L13.TJ (MSMg01no524_l13.g1)
ACCAG594731AG594732
length736729
length of high quality
(start - end)		574 (64 - 637)654 (74 - 727)
definitionCHROMAT_FILE: MSMg01no524_l13.b1 PHD_FILE: MSMg01no524_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:04 2005CHROMAT_FILE: MSMg01no524_l13.g1 PHD_FILE: MSMg01no524_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGNGGAAT
TNCTCACATTTCGCCCACCCATACACCAATCAGATTTGCAGATGTGGCTA
ACTGGGGTGACCCTGAAACTTTTGGGTCTTGAATCTGTGACCATGTACTT
ATTTGACTGACCGGTATGAGAGGTGTCCCAGTGCAATCTAAGAAACACAG
ATCAAAACCACTGACTTGGGCTAGGCATAGAGCCCAGTTAGTGTTATATT
TGTTTGCTATGCATAAAACCCTGAGTTTGGTTGTCAGCACCCCAGTAAAT
AGAGTGTGGTACTGTGCAGCTATAATTCCAACAGCCAGGAAGTGGAGACA
GGAGGATTGTAAATTTAAGATTATCTTGGATGGGCTAGAGAGATAGCTCA
GTGGTTAAGAGCACTGACTGCTCTCCCAGAGGTCCTGAGTTAAATTCCCA
GCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGACGCCCTCT
TCTGGTGTGTCTGAAGATAGCTACAGTGTATTCATATACATAATAAATAA
TTCTTTTTTTAAAAAAAGATTATATTGAACTATGTAGCAAGTTCTTGGCC
AGCCTTCTTGAAAAGCAGGCAAATGGTGGGGGATGGAGAGGAAAGTTGGG
GGGGNNNNNNTNTNNNNTTTNTTTTTTTTTTTTTGTTTTTTTTTTTTTTT
NTTTTTTTTTTTTTTGTTTTTTTTTTTTTTGTTTTT

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGTCTCCCTTTGATCAATCACTGTC
TAACACTTCATAGGAGTCTGACACCCCAACCCCAAAAGGAAGCAAATTAG
GAAGCCACCTGTTCTGTCACTGAAAGATCCTGACAGAATGTAAAAGGTTA
CAGAAGCCCCGAAATTGGCAAAATAGATTTCATTGTTAGTAGAACTAGCT
TCACTGATTTAGATAAATAGAGGTGCACAGTGCTCTGGCTGCTCCTCGAA
CCTGTGTGTCTGCCAATGTTCTGACCAGGTGTGTGCCCATTGCTGCACCT
CACTGCCAGGTGTTTGTGATATTGGTTGCTATATTGGCTGCTGGGAAAGA
GTCGGAAAATCTCCCCAGCAACCATAGCCGGGGCCAATCCGGATTTGCTG
CACCTTCATTAGACTCCTTCCTTGTTTCCCTCCCATACCCATTTCTTGAG
GAATCAATCATTTTAGAATAGACATTGCTTAGATATGGAAATCCCCTATT
CCCCCCTTCTCCTTCCCCCGCCTGAGGGCCTATAAAAACTGAGACCTCTT
TCCCCTCGAGGTTGACTCCTCTACCCCTGCATGGGATATGAGTCATCCCT
AGAGCTCTGGCTTTCCCCCCGAATAAAGCCTTGTGTGGTTTGCATCAAGC
TTGGTCTCTCATGAGTTCTTGGGTGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_l13.b1 MSMg01no524_l13.b1 CHROMAT_FILE:
MSMg01no524_l13.b1 PHD_FILE: MSMg01no524_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:04 2005
         (574 letters)



>mm_chr8_110161917_110162890
          Length = 974

 Score =  669 bits (346), Expect = 0.0
 Identities = 352/354 (99%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cccacccatacaccaatcagatttgcagatgtggctaactggggtgaccctgaaactttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cccacccatacaccaatcagatttgcagatgtggctaactggggtgaccctgaaactttt 295

                                                                       
Query: 61  gggtcttgaatctgtgaccatgtacttatttgactgaccggtatgagaggtgtcccagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gggtcttgaatctgtgaccatgtacttatttgactgaccggtatgagaggtgtcccagtg 235

                                                                       
Query: 121 caatctaagaaacacagatcaaaaccactgacttgggctaggcatagagcccagttagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 caatctaagaaacacagatcaaaaccactgacttgggctaggcatagagcccagttagtg 175

                                                                       
Query: 181 ttatatttgtttgctatgcataaaaccctgagtttggttgtcagca-ccccagtaaatag 239
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 174 ttatatttgtttgctatgcataaaaccctgagtttggttgtcagcacccccaataaatag 115

                                                                       
Query: 240 agtgtggtactgtgcagctataattccaacagccaggaagtggagacaggaggattgtaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 agtgtggtactgtgcagctataattccaacagccaggaagtggagacaggaggattgtaa 55

                                                                 
Query: 300 atttaagattatcttggatgggctagagagatagctcagtggttaagagcactg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  atttaagattatcttggatgggctagagagatagctcagtggttaagagcactg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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