Query= MSMg01no526_f07.b1 MSMg01no526_f07.b1 CHROMAT_FILE:
MSMg01no526_f07.b1 PHD_FILE: MSMg01no526_f07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:13 2005
(623 letters)
>mm_chr8_6443200_6444222
Length = 1023
Score = 1120 bits (579), Expect = 0.0
Identities = 609/621 (98%), Gaps = 6/621 (0%)
Strand = Plus / Minus
Query: 5 gaattctagttctagagccttattaacatcagcaatgttgtctcctaggtaaaagattaa 64
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1000 gaattctagttctagggccttattaacatcagcaatgctgtctcctaggtaaaagattaa 941
Query: 65 ttacttggctgtgattcacagaaatggagtagcaactaaattactaaggggacatatccg 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 940 ttacttggctgtgattcacagaaatggagtaggaactaaattactaaggggacatatccg 881
Query: 125 agcatcagttattgttatgtcacagaaaggattatttagaggaggaaatagagaggcttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 agcatcagttattgttatgtcacagaaaggattatttagaggaggaaatagagaggcttc 821
Query: 185 agtacagtgcgtgtcagagcaaaacacctttttttatttttatttttt--aaagactagg 242
||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct: 820 agtacagtgcgtgtcagagcaaaacaccttttt---ttttt-ttttttgaaaagactagg 765
Query: 243 taagcaagggacatcaataggacaatattttatgcctacttacagctgataaatgtgatc 302
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 764 taagcaagggacatcaataggccaatattttatgcctacttacagctgataaatgtgatc 705
Query: 303 agactttatcagtgtgtctttctgttagtgaatatttctttgtttcttgttaattaaatc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 agactttatcagtgtgtctttctgttagtgaatatttctttgtttcttgttaattaaatc 645
Query: 363 tgggttagctgtatttctttgaaccctcaataatagtgggtgctgggggaaaatcaaacc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tgggttagctgtatttctttgaaccctcaataatagtgggtgctgggggaaaatcaaacc 585
Query: 423 tcacttttaattaaaggcgtaattatgattccgagtcctagaaattcatttattttctct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcacttttaattaaaggcgtaattatgattccgagtcctagaaattcatttattttctct 525
Query: 483 aaaacactgttcctatggttgcagattatttcctaaacttttctagtgacttcgaaattt 542
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aaaacactgctcctatggttgcagattatttcctaaacttttctagtgacttcgaaattt 465
Query: 543 tcaaagatcattaaaaatctggtcttttcattaaaatatttactaaaatttatcaaatta 602
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 464 tcaaagatcattaaaaatctggtcttttcattaaaatatttattaaaatttatcaaatta 405
Query: 603 ttaaagggaagctgggctcag 623
|||||||||||||||||||||
Sbjct: 404 ttaaagggaagctgggctcag 384
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_f07.g1 MSMg01no526_f07.g1 CHROMAT_FILE:
MSMg01no526_f07.g1 PHD_FILE: MSMg01no526_f07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:13 2005
(623 letters)
>mm_chr8_6386190_6387214
Length = 1025
Score = 1120 bits (579), Expect = 0.0
Identities = 613/625 (98%), Gaps = 2/625 (0%)
Strand = Plus / Plus
Query: 1 ataaatgagtgtatattgaagtgggccaactcagagaactagatctggacctgggtggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatgagtgtatattgaagtgggccaactcagagaactagatctggacctgggtggaa 260
Query: 61 gctgaattgtctagtccatccagtctcttgcaactatgccacctgggccacctctactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgaattgtctagtccatccagtctcttgcaactatgccacctgggccacctctactct 320
Query: 121 gctgcccaatcaaggtaaaagactataatccctagtgtctagtgcatagcatcttcttaa 180
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 321 tctgcccaatcgaggtaaaagactacaatgcctagtgtctagtgcatagcatcttcttaa 380
Query: 181 taatatatgcatttatgcacacat--acacacacaccctgcacaaaattaataaatcaca 238
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 taatatatgcatttatgcacacatacacacacacaccctgcacaaaattaataaatcaca 440
Query: 239 atttcatattttgaaaagaagaatcaggcttattgatcatcaaactctgcccatctatat 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttcatattttgaaaagaagaatcaggcttattgatcatcaaactctgcccatctatat 500
Query: 299 tgcaactcactgtattagaaactttggaaaaaccattcatcggcagaagctcaggaagtc 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tgcaactcactgtattagaaactttggaaaaaccattcatctgcagaagctcaggaagtc 560
Query: 359 ttgtaaacatcaaagtcaaaaaagacttttccatgtttacatatgcaagagcatgaatgg 418
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ttgtatacatcaaagtcaagaaagacttttccatgtttacatatgcaagagcatgagtgg 620
Query: 419 ggcaaatcagatctttattcattactcttttccttcctaagttctgtatggacaagaaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcaaatcagatctttattcattactcttttccttcctaagttctgtatggacaagaaag 680
Query: 479 gaaggaaacccttctgtattgtctttatatgcagatataataaaatctataagaattttt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaggaaacccttctgtattgtctttatatgcagatataataaaatctataagaattttt 740
Query: 539 ggttagttataattatgtcttacccttaaacgcaggagcttggcatgatggctattgcct 598
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 ggttagttataattatgttttacccttaaacgcaggagcttggcatgatggctactgcct 800
Query: 599 ataatcctaaccactaagctataag 623
|||||||||||||||||||||||||
Sbjct: 801 ataatcctaaccactaagctataag 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1025
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1015
Effective search space: 622195
Effective search space used: 622195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
